FMO10959.5prime Sequence
876 bp (876 high quality bases) assembled on 2011-11-18
> FMO10959.5prime
CAGTCGACATGGCAAAGAAGGGGGGACAACAACAACTGCAGGCTGACATC
CAAACGGACGAGGAGCTGGAGCGTTTCATGGAGCGACCAGGACTCTTGGT
TTTGGATGTTTACTCGGAATGGTGTGGTCCTTGCCAGGGTATGGTCGGAT
CCTTGCGTAAAATCAAACTGGATGTTGGTGGCGATAATCTGCATCTGGCC
ATTTGCAAATCGGATACGATCACGGCCTTGAAACGATTCAATAAGAGAAG
TGAGCCCATCTGGCTTTTTGTGACGGGCGGCAGGGCCGTAAATCTTCTGT
TCGGTTCGGATGTGCCTAAGCTGGTGAGTCTGCTGGTCAAAGAGCTAGAG
AAGACCATGCAAAAATCATCGCGTCCAGGCACCTACAGACTTGACGAACT
GCAGCCCATCGAGGTGGAGCAGCAGCGCATCAAAATGGAGGCCATCGAGC
GGGCCGAGCGGGCGGAGCGCGAGATAAAGCACAAGAAGCAGATAGACTAC
CTTAACCATGTAACGGACTCCATTATGGAGAATATGCCCGATATTGGAGT
GACTGTCTTTGGACCGCAAGTCAATCGTGATATGTTCAAGAAGCTAACCG
AACCAGCCGAAGCGCTCAAAATGCAGTGCAAGGATCGCCGGGTCATCCAG
GTGAGCACCGATCAGTTCGAGATTGTGAACTTTGCATGCAAGAATCCCAT
GCCGCCGGATGTGATCGAACAACTGGACGGCAAGGAGCTGCTCATGTGCT
TCTGGAAGATTGACGAAAGCATCGGCACAGTGCCCAACGTTCTAATGGCC
TATGCCCACGAGCTAACCAAGGAGCGAGTGGCACCACCCAACGATGATAT
ACCCGAGGAGCATGTTATACCGCCGC
FMO10959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18130-RA | 2344 | CG18130-RA | 103..970 | 9..876 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11991629..11992230 | 876..275 | 2995 | 99.8 | Minus |
| X | 23542271 | X | 11992414..11992518 | 203..99 | 525 | 100 | Minus |
| X | 23542271 | X | 11992576..11992666 | 99..9 | 455 | 100 | Minus |
| X | 23542271 | X | 11992282..11992354 | 276..204 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:00 has no hits.
FMO10959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:38 Download gff for
FMO10959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..970 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:26 Download gff for
FMO10959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..970 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:04 Download gff for
FMO10959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18130-RA | 95..970 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:04 Download gff for
FMO10959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11991629..11992229 | 276..876 | 99 | <- | Minus |
| X | 11992283..11992354 | 204..275 | 100 | <- | Minus |
| X | 11992414..11992517 | 100..203 | 100 | <- | Minus |
| X | 11992576..11992673 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:26 Download gff for
FMO10959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11885662..11886262 | 276..876 | 99 | <- | Minus |
| arm_X | 11886316..11886387 | 204..275 | 100 | <- | Minus |
| arm_X | 11886447..11886550 | 100..203 | 100 | <- | Minus |
| arm_X | 11886609..11886706 | 1..99 | 95 | | Minus |
