Clone FMO10960 Report

Search the DGRC for FMO10960

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5111-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10960.5prime Sequence

1114 bp (972 high quality bases) assembled on 2011-11-18

> FMO10960.5prime
CAGTCGACATGTCCCAGATAAACAATATATTCATTAAGCTGCGAGCTCGT
CTGCGGGAGCGTGATATCAAGTTGTGGGAGGAGCCCTACTACTTCGAGGA
GGTGGGCAGCATCGAGTCGGAGATGGACCGCCTGGCCAGGGACATCAGTG
GCGAACTGGGCATCAGTGTGTCGGACTGCAGAATTGCCTTGGGCGAATTG
CAAGATGGTGCCTTGAGGAAGCTGGCGGCTCGCCGAGAGTTCAATGACAC
CGGATTGGCCACGTTCAATGTGCGGTGTGTGGACAGCAAGGGTGGCACCG
TGCAAATGCTGGAGATCAAGTGTTCGCTGGGTGGACTGGGCTCGGATCTG
CAAGCTGAGGTGGCCAAGAAGTTGGATATCGTTGATTCCAGTCATGTGAA
ATGCATCTCCGGAGGACGCATCATCAATGGGCAGAAGACACTGGCCTCGC
AGGGGCTCAAAACCAATCAGCACCTCATGGTGGTTGTGGGTGGAACTAAT
GAAGGTCAGGAGTTGCACGAACGTATCCAAAGGATTCGTGCGGACTTGGA
GTTAGTTGCGGATGCAGATCGCTTTATGGAAATGGAGGATCAAGATGGAC
GTCCAATTTTCTTGCCACGCGAGGAAAATCGATCCCTATTGATGGCCATG
AGCATGTACGAAGTGGCCAGAGTTGCCATGCATAAGGAGAACTTCGATGA
GGCTCTACTCATCCTACTCGAGGCCGATGAACTCTTCTCCCAATGTGACT
CAAGCTCCTGGAAGGAGTGGATAACTATGCCTTAATCAATCTAGATATTG
TTTGGTGCTATCTGCGCCTGAAGAACATCACCCAACTGCCAGATGCACAG
CGACGTTTGGATATTTGCGAGAGGGGCTTTGTCAAGAGCTATGGCGAGCA
GTTCATCCGATGTTCTCGATTAAGGGTCCAAGTAGCCCGGAACGAGCTTT
GATCATGAAACTGCACCTGCTCCAAGGTGTGCTCCTTCTTTCACCAAAAT
CGCCGGATGAGCCTACGAAAAACTTGGAGGGTGGCCGACAAAGACTTGAT
GAAGGTCAAGATGGAATTGAACCTGGACTAAGCCCTTCTCGTTGAATGGG
TCTATGAGGAATCG

FMO10960.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5111-RA 2005 CG5111-RA 88..1193 7..1114 5010 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25506362..25507362 7..1006 4770 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:08 has no hits.

FMO10960.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:39 Download gff for FMO10960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5111-RA 79..1108 1..1024 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:30 Download gff for FMO10960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5111-RA 79..1108 1..1024 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:09 Download gff for FMO10960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5111-RA 79..1108 1..1024 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:09 Download gff for FMO10960.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25506353..25507382 1..1024 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:30 Download gff for FMO10960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21332075..21333104 1..1024 98 == Plus