Clone FMO10961 Report

Search the DGRC for FMO10961

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTER94-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10961.5prime Sequence

1079 bp (946 high quality bases) assembled on 2011-11-18

> FMO10961.5prime
CAGTCGACATGGATCATGATGGGGATACGAGGGACTTTATGCGGGGATAT
CACAGCGAGCAGGATGAGAAAATGAAGCCGAAAGACTCGTTCGATAAGCG
TGAAGATCTGGCTACGGCGATCCTGAAGCGCAAGGACCGTCCCAACCGAC
TGATTGTGGAAGAGGCGCAGAATGACGACAACTCTGTGGTGTCGCTATCG
CAGGCGAAGATGGATGAGCTGCAGCTCTTCCGTGGCGACACCGTGATTCT
GAAGGGCAAGCGCCGAAAGGAGACGGTGTGCATCGTGCTCTCGGACGACA
CCTGTCCCGACGAGAAGATCCGCATGAACCGCGTGGTGCGCAACAACCTG
TGCGTCCATCTTTCAGATGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAA
GTACGGCAAACGGGTGCGCATCCTGCCCATCGACGAAAGCACCGAAGGCG
TTACCGGCAACCTGTTCGAGATCTATCTGAAGCCGTACTTCCTAGAGGCC
TATCGGCCAATCCACATGGGCGACAACTTTATTGTGCGCGCCGCCATGCG
TCCTATTGAGTTCAAGGTGGTGCTGACCGACCCGGAGCCCTACTGCATCG
TAGCTCCCGAGACTGTAATCTTCTGCGACGGTGATCCAATCAAGCGCGAG
GAGGAGGAGGAGTCCCTAAACGCCGTTGGCTACGATGATATCGGTGGTTG
CCGCAAGCAGCTGGCCCAGATCAAGGAGATGGTTGAGTTGCCTTTGCGGC
ATCCATCGCTCTTCAAGGCCATTGGTGTGAAGCCACCGCGTGGTATTCTT
ATGTACGGTCCCCCGGGTACCGGTAAGACCTGATTGCCAGGGCTGTGGCC
AACGAGACCGGAGCCTTTTTTCTTCTGATTACCGAACGGAGATCATGTCA
ACTTGGCCGGAAAATCGGATCAAATTCGGCTTAGGGCTTCTAGGAAATCC
AAAAAAATCTGCCGGTCTATATTCTTCTCTTCATGAAATATGACGCTATT
TTCCTCGACGCGGAGAAAAACCCACGGGAGAGATGGGACGTTCTCATTTG
GTTCGCATCTTTTGATCTGGAATGGATAT

FMO10961.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RE 3055 CG2331-RE 96..1009 9..919 4330 98.6 Plus
TER94-RC 3058 CG2331-RC 96..1009 9..919 4330 98.6 Plus
TER94-RA 3016 CG2331-RA 141..967 96..919 3880 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9990657..9991357 201..899 3300 98.7 Plus
2R 25286936 2R 9990470..9990574 100..204 525 100 Plus
2R 25286936 2R 9990298..9990389 9..100 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:15 has no hits.

FMO10961.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:39 Download gff for FMO10961.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 1..893 9..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:34 Download gff for FMO10961.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 96..988 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:12 Download gff for FMO10961.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 96..988 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:12 Download gff for FMO10961.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9990298..9990389 9..100 100 -> Plus
2R 9990471..9990573 101..203 100 -> Plus
2R 9990660..9991354 204..896 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:34 Download gff for FMO10961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5877803..5877894 9..100 100 -> Plus
arm_2R 5877976..5878078 101..203 100 -> Plus
arm_2R 5878165..5878859 204..896 98 -> Plus