FMO10962.5prime Sequence
1106 bp (993 high quality bases) assembled on 2011-11-18
> FMO10962.5prime
CAGTCGACATGGAGCTATCGCTGTCACCAAAAGAAACGGAGATCCGTCCC
AACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTGGCTAA
ACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCTGGAGG
CGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCTACATT
ATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACCATCAC
ACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTACTGGC
TGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATAAAATC
CAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGAGAGAC
CCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGGTTACG
ATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGACTTTTT
CAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACCATCGA
TTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGATAATC
TTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGACGAAGT
GCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACTATAGT
CGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCTGTGGA
ACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAAGCCAGTCAGTTG
GTCAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTATAAGTG
CAATCAACGGGGAAGCTGCACCTGATCAATTTGATGTGGGCATGCCAGCA
AAAGATGATCTTAGCGATGCCATGGAGTCTATTTACTGGACACTACGGCC
AGAGTATTTGTTGTGGTAGAGCCAGGCACCGCAGCAAATGCCTTTCTGCA
TGGAAAATGGAAGCCTTTGTAAAAAGAAAAATATCCGATAATACCGTTGG
TGGGTGCGGGTCTCAGGTTCCGACGTGGGAGTTACCGTTCTCTTTGCCAC
CTGGTT
FMO10962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RB | 3306 | CG6433-RB | 483..1552 | 7..1062 | 4805 | 97.7 | Plus |
| qua-RC | 3318 | CG6433-RC | 483..1564 | 7..1062 | 4675 | 96.6 | Plus |
| qua-RA | 3266 | CG6433-RA | 474..1512 | 38..1062 | 4650 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17488857..17489369 | 960..452 | 2320 | 98.6 | Minus |
| 2L | 23513712 | 2L | 17489693..17489903 | 248..38 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 17489431..17489633 | 451..249 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:23 has no hits.
FMO10962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:40 Download gff for
FMO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 471..1491 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:39 Download gff for
FMO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 477..1497 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:15 Download gff for
FMO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 477..1497 | 1..1010 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:15 Download gff for
FMO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17488814..17489369 | 452..998 | 97 | <- | Minus |
| 2L | 17489431..17489633 | 249..451 | 100 | <- | Minus |
| 2L | 17489693..17489902 | 39..248 | 100 | <- | Minus |
| 2L | 17491802..17491836 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:39 Download gff for
FMO10962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17488814..17489369 | 452..998 | 97 | <- | Minus |
| arm_2L | 17489431..17489633 | 249..451 | 100 | <- | Minus |
| arm_2L | 17489693..17489902 | 39..248 | 100 | <- | Minus |
| arm_2L | 17491802..17491836 | 1..38 | 92 | | Minus |
