FMO10964.5prime Sequence
1095 bp (1010 high quality bases) assembled on 2011-11-18
> FMO10964.5prime
CAGTCGACATGGGCTTACGTAGGTTTATTCGCAAGCATTTTGGCAGTAAA
AATTCATTGGGCAGTGCAGTTAAAATTATAAAAAGCATAGAGAACGACGA
GTTGAAAAATAAACGTTTAAATGGCACTTTGGCCAGCACGGCAGCAATTG
CAACACCCATCAAAGGAGTGGCCACCAAATCCGGAGCCACAAACAAGCTG
CAACAATCGGCAAAAACTAAATCAACCGCGAGTATCAAAAGTCCAGCAAT
TGTCGGCGTTTCCGAGGAATCCCTGCGCTCTGGCGTGGATCAAACCGAAC
TTCAGGAGCTGAACAATGGGCAATCTGCTACCGGTTGTCCGACGCCGCCG
ATGGCGCGGGACTCAAAGCGTACGTCCATTGGAAATGAGTTACCCTGTGA
GACGGAGGCCAAGTTGAAGAGATGCGAGGACCAGCAGGATCCACAAGCAT
CCACGACGGCATCACCCCTACCGATGATCAATCCACAGGAACAAGAAGCC
AGTGGCCAGGTCAAAGAAGCAACAATCACCACTGCAAATGAGCCAAACGC
CTTGTCCTTGCCCGACGAAATCAGCAATTCGGTCAGCTCGACGACGATGC
TGGCCACGCCCCGCGTAGACATAGCCGCCCAGTATCCCGTCCTGAAACCA
TTCACGGAGAACGGAGAGCTGGACTGTGCACGACTGGCCAAATTCTTCCA
GGACACCCAGTTCGAGAGGAAGGAGGAGCAACGCCAGATTCTGGGCCTCT
CCGTAATGGTGCAGTTCATGTCCAAAGAGCTGGATGCGGTTGCCTGCAAG
GAGAACAAACATCAATGCGCCCGGACCAAGGGAACGCTAGAGAAGACTAT
ATTGCTGCTACAGCATACGCAAAAGGATTGCGAGCGACTACGCGAGGATT
TGGGAGGACAAGGGCCTGTAGTGATTCAGCGGCAGCAGAGAAGAATATCT
GCATCGCACTGAACTGAAGCAGCTGAAAGAATTATTGGAGGTGCATTGCT
GCCAGTTAAGTTCTGCCAATTAAAGTCCCACTGGCGGGCCAAGACGAGGG
AAGCAACGCAAGGAGGCTACAGAATGGAGTTCCCCAAACTTGCAC
FMO10964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RC | 3121 | CG9660-RC | 137..1241 | 9..1095 | 4815 | 96.8 | Plus |
| toc-RI | 3266 | CG9660-RI | 382..1386 | 109..1095 | 4330 | 96.6 | Plus |
| toc-RH | 4787 | CG9660-RH | 852..1856 | 109..1095 | 4330 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3080994..3081269 | 542..267 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 3080651..3080889 | 779..541 | 1150 | 98.7 | Minus |
| 2L | 23513712 | 2L | 3094217..3094375 | 267..109 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3071571..3071766 | 971..778 | 770 | 97.5 | Minus |
| 2L | 23513712 | 2L | 3094460..3094559 | 108..9 | 485 | 99 | Minus |
Blast to na_te.dros performed 2014-11-27 20:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 569..710 | 76..222 | 122 | 61 | Plus |
| Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 124..265 | 76..222 | 122 | 61 | Plus |
FMO10964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:41 Download gff for
FMO10964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..1241 | 9..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:48 Download gff for
FMO10964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..1241 | 9..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:21 Download gff for
FMO10964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RC | 137..1241 | 9..1095 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:21 Download gff for
FMO10964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3071571..3071764 | 780..971 | 97 | <- | Minus |
| 2L | 3080651..3080887 | 543..779 | 98 | <- | Minus |
| 2L | 3080994..3081268 | 268..542 | 100 | <- | Minus |
| 2L | 3094217..3094375 | 109..267 | 100 | <- | Minus |
| 2L | 3094460..3094559 | 9..108 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:48 Download gff for
FMO10964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3071571..3071764 | 780..971 | 97 | <- | Minus |
| arm_2L | 3080651..3080887 | 543..779 | 98 | <- | Minus |
| arm_2L | 3080994..3081268 | 268..542 | 100 | <- | Minus |
| arm_2L | 3094217..3094375 | 109..267 | 100 | <- | Minus |
| arm_2L | 3094460..3094559 | 9..108 | 99 | | Minus |
