FMO10965.5prime Sequence
1119 bp (1006 high quality bases) assembled on 2011-11-18
> FMO10965.5prime
CAGTCGACATGAGGAAATCAGCGGGAGGATTTCATTCCACATCCAATGAA
GATGGGCAGCATGGCGATGGCTCCTCCGTGCGACTACTGAGAATTCCCAG
AGCCGCACCTGCGATGGAGAACTACGGATTTCAGCTGACCCGCAGCAAAT
GGGATCCCTATCCCTGGGTTTGCGAAGTGGCAGCCGGCACACCTGCCGCT
CTCTGCGGCCTGAAACCCGGCGATTGCGTTCTGGAGGTAAATGGCAACGA
TGTTTTAGGCTTGAGAGTGTCTGAAATCGCCAAAATGGTGAAGAGTCAAA
AGGACTGCGTCACAATTCTCTGTTGGAACAGTGAATGTGATAAGGACTGT
GATACTAATAGCATCTGCTGCGCCCCCATGCCCACCAGTTTGCGCCGCCT
GTCCCTCGTCCTGGAGAGCATCCTGCGCCTCGTCGAGTGTCCTGTCTGCG
GGGTGACCATCTCACCGCCGGCGATGCAGTGCCAAAACGGACACCTGCTC
TGCGTGGACTGTCGCATCCGCTCGGAGCGATGTCCTGTCTGCCGGGACTT
CTACACTCCCCGCCGAGCGCTGTTGGCGGAGCAAATTTTCCTGACCATTG
CCAACGCCTTCGAGATGTGCCGCTCGGAGAACAAGCTGCGGCAGAAGCTC
TTTGCCGGGATAACACGGCCAGTCGTGGGCCGACAGGACAGGATAACCGG
ACAGGACACCTGGCGAAAGCGCAGGCCAGTGCTGCCAACGAACAAGTTCC
TAACCAAGTTGCTTGAGGGCTGCGCCTACTCGACGGATAACCTCAGTCCC
TCGAATGCCGCTACTCTGCTGCGGACTAATACCACGGACGTCGCTGGCGA
CTCCAGTGAAATCCCGGCCAGAACATCGCCAGTGACAGCCACGCCCCCCG
AAAGGACAACAATGCATGCCACGCTTGACGCGAATGCGCGCATCCTTCAC
TCTCGACGAATGATTTACAGCAGGAAGGAGTTAAGCCGAATGCCCGAGGG
GCGTTGACGAGGATCCGGAACGAACGCAGCCACATCTCTGCCCATCTGCA
TGGCCCTCCGCTACCAGCCTCGTTTAGCCGGCATCATGATTTCGGATTGC
ACGTTCGAACCTCCCTGTC
FMO10965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6688-RA | 1778 | CG6688-RA | 103..1186 | 9..1086 | 5170 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23014151..23014874 | 360..1079 | 3240 | 98.3 | Plus |
| 3R | 32079331 | 3R | 23012514..23012674 | 9..169 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 23013914..23014038 | 235..359 | 625 | 100 | Plus |
| 3R | 32079331 | 3R | 23012741..23012812 | 167..238 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:44 has no hits.
FMO10965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:42 Download gff for
FMO10965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1190 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:53 Download gff for
FMO10965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1190 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:24 Download gff for
FMO10965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1190 | 9..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:24 Download gff for
FMO10965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23012514..23012672 | 9..167 | 100 | -> | Plus |
| 3R | 23012742..23012810 | 168..236 | 100 | -> | Plus |
| 3R | 23013916..23014038 | 237..359 | 100 | -> | Plus |
| 3R | 23014151..23014887 | 360..1089 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:53 Download gff for
FMO10965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18838236..18838394 | 9..167 | 100 | -> | Plus |
| arm_3R | 18838464..18838532 | 168..236 | 100 | -> | Plus |
| arm_3R | 18839638..18839760 | 237..359 | 100 | -> | Plus |
| arm_3R | 18839873..18840609 | 360..1089 | 98 | | Plus |
