FMO10966.5prime Sequence
1071 bp (962 high quality bases) assembled on 2011-11-18
> FMO10966.5prime
CAGTCGACATGTCCAGCGACGCCAATACGGCCGTGCTGCGCAACTGCATC
CGCTTGCCGCTGGCGGAGGATGAGCTACTGGAGGTGACGGCCAAGGCCAA
GGATTATGCCATTATGCACGGCGCCGCCATGCGATCGAAGACGGCCTTCA
GTCCGGACTCGTTGAATTTCGCCCCCTTCGTGCTGGTGCCTTCCTCGTTT
CCGCGCAAGGAGTTCGAAAAGGCGGTGGCCCTACAGCCGATCATCAACCG
GCTGATGCACAATGTGGCCCACGACGAGGAGTTCATCACGACGACGCTGG
CGGAGACGATCAAAGTGGACGAGTTCACGGCCAATCTGTTCAACATCTAT
CGCAAGGTGCTGGCGCACGGATTCACCCAGGCATATAGCATCGGTCTGTT
GCGATCCGACTATATGGCACACGTGTCCGAGGGCTGTGCGATAAAGCAGG
TCGAGATCAACACGGTGGCCTCCAGTTTCGCTGGCATAGCCACCCAATTG
GTGCCGCAGCAGAAATTCGTACTCAGCGAGCTGGGACATGCGGATAAGCT
GCACAATATGCCGGATAACAATGCACTGGCCGGACTCTGCGATGGCATGG
TGAAGGCGTGGGACATCTATGCAAAGCCGCAGGCCGTCATTCTGTTCATC
ATCGAGGATGTGTCGTACAACATTTGCGACCAGCGGTTCCACGAGTTCTA
CATTCGCGAGACATATCCGCACATCAAGGTGCTGCGCCGCACCCTCACCG
AGGTCCATCGGGAGGGCAAACTGGGCCAGTCCAAGGAGTTGCTCCTTGGA
TCCCAAGAGGTGGCCGTCATCTACTTCCGAGCTGGCTACGAGCCCGGACA
CTATCACTCGCAGCGGATTGGGATGCCCGCTATCTGATGGAGACTCGCTG
GCCATCAGTGCCCGTCGATTCACTACATTTGGCGGGCACCAGAAGTGCAG
CAAGCATTGGCGCAGCGGCGTGCTCGAGCGTTTCATCACGGATCGAGGAA
ATCAAGCGTGGCAGATTTCCACGGTCTCTAATCCTGACGACACAGCGGCC
ATGCAGCTCGGAATGGCCTGC
FMO10966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GS-RJ | 1789 | CG6835-RJ | 165..1173 | 8..1006 | 4745 | 98.6 | Plus |
| GS-RE | 1938 | CG6835-RE | 314..1322 | 8..1006 | 4745 | 98.6 | Plus |
| CG32495-RG | 1938 | CG32495-RG | 314..1322 | 8..1006 | 4745 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17897376..17897614 | 558..796 | 1195 | 100 | Plus |
| X | 23542271 | X | 17904798..17905036 | 558..796 | 1195 | 100 | Plus |
| X | 23542271 | X | 17890461..17890674 | 168..381 | 1070 | 100 | Plus |
| X | 23542271 | X | 17900616..17900829 | 168..381 | 1070 | 100 | Plus |
| X | 23542271 | X | 17900145..17900304 | 8..167 | 800 | 100 | Plus |
| X | 23542271 | X | 17889990..17890149 | 8..167 | 800 | 100 | Plus |
| X | 23542271 | X | 17896525..17896661 | 378..514 | 685 | 100 | Plus |
| X | 23542271 | X | 17903945..17904081 | 378..514 | 685 | 100 | Plus |
| U | 3151297 | U | 1396054..1396190 | 378..514 | 685 | 100 | Plus |
| U | 3151297 | U | 1406393..1406529 | 378..514 | 685 | 100 | Plus |
| X | 23542271 | X | 17897691..17897890 | 797..988 | 595 | 93.5 | Plus |
| X | 23542271 | X | 17905113..17905312 | 797..988 | 595 | 93.5 | Plus |
| X | 23542271 | X | 17897188..17897230 | 515..557 | 215 | 100 | Plus |
| X | 23542271 | X | 17904610..17904652 | 515..557 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:52 has no hits.
FMO10966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:43 Download gff for
FMO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GS-RE | 305..1322 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:57 Download gff for
FMO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GS-RJ | 156..1173 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:29 Download gff for
FMO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32495-RG | 305..1322 | 1..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:29 Download gff for
FMO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17900136..17900304 | 1..167 | 98 | -> | Plus |
| X | 17900616..17900828 | 168..380 | 100 | -> | Plus |
| X | 17903948..17904081 | 381..514 | 100 | -> | Plus |
| X | 17904610..17904652 | 515..557 | 100 | -> | Plus |
| X | 17904798..17905036 | 558..796 | 100 | -> | Plus |
| X | 17905113..17905332 | 797..1006 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:57 Download gff for
FMO10966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17794169..17794337 | 1..167 | 98 | -> | Plus |
| arm_X | 17794649..17794861 | 168..380 | 100 | -> | Plus |
| arm_X | 17797981..17798114 | 381..514 | 100 | -> | Plus |
| arm_X | 17798643..17798685 | 515..557 | 100 | -> | Plus |
| arm_X | 17798831..17799069 | 558..796 | 100 | -> | Plus |
| arm_X | 17799146..17799365 | 797..1006 | 93 | | Plus |
