FMO10969.5prime Sequence
1073 bp (940 high quality bases) assembled on 2011-11-18
> FMO10969.5prime
CAGTCGACATGGCCAAGAAGAAAAGCGAGGAGCACTCCGGTACGGATGCG
AACGACAGTGATTACCAGGAGGAGCCGAACTTTGACGATCCGCCCGGGTT
CGTGGACAACATTAGTGATGAAGATCTGTTGGGCGACATGTTGGCCCAGC
GCCCCTCGGAGGCCGATGGCGTCGAGAGTGTGGTGGTAGTGGACAATATC
CCAAAGGTGGAGCCGGTGCGCCTGGAGAAGCTGAAGTTGGTCATCAACAA
GCTGTTTTCGAACTACGGAGAAATCGTCAATGTGGTCTATCCCGTCGACG
AGGAGGGCAAAACCAAGGGCTACGCCTTCATGGAGTACAAGCAGGCCAGA
CAGGCGGAGGAAGCCGTCAAGAAGCTCAACAATCATCGCCTAGACAAAAA
CCACACCTTTGCCGTCAATCTCTTCACCGATTTCCAAAAGTACGAAAACA
TCCCCGAGAAGTGGGAGCCGCCAACCGTGCAGACCTTCAAGGTGCAGAGC
GATCTATACAACTTCATCAATGACCCGGACACTTATGACCAGTACTGCGT
GGCAGCGGAGACCGCTCCCAACTGCGTGCAGGTTGGTTTCTGGCAAAACG
TATTGCCCGAACCCTTTGAGCTGGAGACCCGCGAACGCTTCACCGACACC
TTCGTCAAGTGGTCGCCCCTGGGTACTTATGTAGTCACCTTCCACAAACC
CGGCGTGGCCATCTGGGGTGGCAGTAGCTTCCAGAAGATTCAGAAGTTCC
CCCATCCTGCTACCCAATTCGTTGAGTTTTCGCCCTGCGAGAATTACCTA
GTTACTTACTGACCGACACCCACGGGCCAAAAGATCATCATTTGGGACAT
TCGCACTGGAGCCGAGAGCGTTCGTTTGTTGCCGATGGCATGTCGGTCTT
TCTATGTCTGCTGGTCGCACGACGAACAGTTTGTGGTCCGCATTGGGGCG
AAAAATCCAATCCCACATCTACGAAGACACCCTCTTTCTATCATCTTGAA
CTGAAAGTCACTAAGATCCGGCATCTGGCTTCCTCTTGGTCCCACAGACA
CGTGATTGCTACTGGGTGGAGAC
FMO10969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S9-RA | 2565 | CG4878-RA | 133..1200 | 9..1071 | 4600 | 96.2 | Plus |
| eIF3-S9-RB | 2481 | CG4878-RB | 128..1195 | 9..1071 | 4600 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17537070..17537633 | 440..1005 | 2215 | 95.1 | Plus |
| 2R | 25286936 | 2R | 17536694..17537014 | 122..442 | 1575 | 99.4 | Plus |
| 2R | 25286936 | 2R | 17536465..17536579 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:50:15 has no hits.
FMO10969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:45 Download gff for
FMO10969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RA | 253..1320 | 9..1073 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:08 Download gff for
FMO10969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RB | 128..1195 | 9..1073 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:41 Download gff for
FMO10969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S9-RB | 128..1195 | 9..1073 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:41 Download gff for
FMO10969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17536465..17536579 | 9..123 | 100 | -> | Plus |
| 2R | 17536696..17537011 | 124..439 | 99 | -> | Plus |
| 2R | 17537070..17537669 | 440..1038 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:08 Download gff for
FMO10969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13423970..13424084 | 9..123 | 100 | -> | Plus |
| arm_2R | 13424201..13424516 | 124..439 | 99 | -> | Plus |
| arm_2R | 13424575..13425174 | 440..1038 | 94 | -> | Plus |
