FMO10970.5prime Sequence
803 bp (728 high quality bases) assembled on 2011-11-18
> FMO10970.5prime
CAGTCGACATGTTGGGAGTCGAGAAGCCATATGTGGTAGAGCCAGCTATG
GCCGTAGCGCAGGACTCGTTTGAATTTGGCAGCAACGGCGATGGGAGCTC
CACCAACAGCCACACAAGCAACGCCAGCTCCAAGGACCTTGGCAGACTGA
CTATTGGCGACGGAGCCCAGAACTTCGCCCAAGACAGCAGTGCCAACAGC
ATTGACCAGGACAGCACGGACAACACAAACAGCGACTGCAATCCAATCAC
ACTGAACGATCTACTCGGCTTGTGCGGTGCCAGCACTGCCAATGAAGTGG
TCGGTACTGGCCAGACCCCCTCGACATCAGCGCCGATACTTGGAGCAGGA
GGAGGCGGAAGAGCAAATGGAGTTACAGCCGGCGCAGCAACGGCAACAGG
AGTGGGAGTTGGAGCTGGAGGGACATTACCTGGGCCAGGAGTTCCATCGA
TCCAGGGAGGTGGTGGAGGAGGAGTCGTGGGACAACAAACCAATGCCTCG
TGCAACACCTCAGCGGCTAACCCATCAGCCAGCTTCGGTGGCAACGGCAG
CAGCAGCGACGTCAATAATCTGCTGCTCGCCAGTGCTGCTGCCGCTGCCG
CCGCGGCTGCCGGTGATGGCGCTCAACTGTCCGCCAATGCGGGATCCTAC
GCTCCGCTGACGCCCCAACTCCACTCATTCATCGGACTCGCCGGGCACAA
AGTCCAATTTTGACTACTTCAATTTGAAAATTGTTGCAAAAGTAACCTCA
TTTAATGCTTTCCAAAAACAAACATTAGCCTTCGATTGCTCTGCCCTCTT
TAT
FMO10970.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RD | 3258 | CG10868-RD | 302..1088 | 7..794 | 3630 | 97.9 | Plus |
| orb-RB | 4251 | CG10868-RB | 302..1088 | 7..794 | 3630 | 97.9 | Plus |
| orb-RF | 3079 | CG10868-RF | 321..923 | 191..794 | 2740 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23269125..23269603 | 720..241 | 2290 | 99 | Minus |
| 3R | 32079331 | 3R | 23269751..23269984 | 240..7 | 1140 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:24 has no hits.
FMO10970.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:45 Download gff for
FMO10970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RD | 294..1096 | 1..803 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:11 Download gff for
FMO10970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 294..1096 | 1..803 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:45 Download gff for
FMO10970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RB | 294..1096 | 1..803 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:45 Download gff for
FMO10970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23269129..23269603 | 241..716 | 98 | <- | Minus |
| 3R | 23269751..23269987 | 1..240 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:11 Download gff for
FMO10970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19094851..19095325 | 241..716 | 98 | <- | Minus |
| arm_3R | 19095473..19095709 | 1..240 | 97 | | Minus |
