FMO10971.5prime Sequence
1083 bp (947 high quality bases) assembled on 2011-11-18
> FMO10971.5prime
CAGTCGACATGACCACTTGGACTAGCTTGTTCCTGCTTTTGGGCCTTGGC
CTTCTGGCTGTCGATGCCGCGGCGCCCTGGTGGAAGACCGCTTCCTTCTA
CCAGATCTACCCGCGCTCCTTCAAAGACAGTGACGGAAATGGAGTCGGAG
ACTTAAACGGGGTGACCGAGAAGCTGGAGTACCTTAAGGAGATCGGCGTG
ACCGCCACCTGGCTGTCTCCTTTTCTGAAATCCCCGATGGCAGACTTTGG
CTATGACATTTCCGATTTCAAGGCGGTCGACCCTCTTTTCGGAACGATGG
AGGACTTCGAGAATATGGTCTCCCGCGCCAAGGAGCTGGGTGTCAAGATT
ATTCTCGACTTCGTGCCCAATCATTCCAGTGATGAGTGCGATTGGTTCCT
TCGTTCGGCTGCCGGCGAGGAGGAGTACAAGGACTACTACATGTGGCACC
CGGGATTCCTCGATGAGGACGGAACCCGTCGCCCGCCTACCAACTGGGTG
AGCGTGTTCCGCGGCAGCGCATGGGAGTGGCACGAGGGTCGCCAGGAGTA
CTATCTTCATCAATTCCACAAGAAGCAACCGGACTTCAACTTCCGTAATC
CCGTGGTGCGCGAGGAGATGAACAACGTGCTGCGATTCTGGCTGGAAAAG
GGCGTCGATGGTTTCCGCGTGGATGCCATCTACCACGCCTTTGAGATTGA
GGCCGACGAGAACGGAAACTATCCGGATGAGCCCCGCAACGATTGGACCA
ACGATCCAGATGAGTACAGATACACCCACAAGATCTACACTGTGGATCAG
CCAGAGACCCCGCACTTGGTATACGAATGGCGCCAAATTCTTGAGCAGTT
CCAGGCTGACAATGGCGGTGATGACCGCATATTGATGGTGGAGAACCTGT
CCCCCATTGAAATCGTTATGCATTACTATGGCAACGAACCGCCGATGGAG
CCCAGAATACCGGTTCAATTTCCAGCCTGATAAGTATCTGGCCCTAACGA
TTCCGAATGCGCATCATTACCAAGTACCTTGATAACACCTGGCCTTATCT
GATTCTAAGGGAGAGCGCCAACTTGTGATCCGT
FMO10971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A4-RA | 1786 | CG8693-RA | 10..1072 | 9..1073 | 4790 | 97.4 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 222..724 | 78..583 | 315 | 71.2 | Plus |
| Mal-A5-RA | 2045 | CG30359-RA | 222..724 | 78..583 | 315 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8458824..8459635 | 9..820 | 4045 | 99.9 | Plus |
| 2R | 25286936 | 2R | 8457357..8457518 | 449..288 | 300 | 79 | Minus |
| 2R | 25286936 | 2R | 8459809..8459889 | 877..956 | 295 | 93.8 | Plus |
| 2R | 25286936 | 2R | 8459697..8459750 | 821..874 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 8472078..8472269 | 77..268 | 240 | 75 | Plus |
| 2R | 25286936 | 2R | 8451519..8451801 | 380..98 | 230 | 72.1 | Minus |
| 2R | 25286936 | 2R | 8463133..8463533 | 180..583 | 230 | 71 | Plus |
Blast to na_te.dros performed 2014-11-27 20:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1347..1400 | 137..191 | 110 | 69.1 | Plus |
FMO10971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:46 Download gff for
FMO10971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8693-RA | 1..967 | 9..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:14 Download gff for
FMO10971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A4-RA | 1..976 | 1..976 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:48 Download gff for
FMO10971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A4-RA | 1..976 | 1..976 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:48 Download gff for
FMO10971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8458815..8459635 | 1..820 | 99 | -> | Plus |
| 2R | 8459697..8459753 | 821..877 | 98 | -> | Plus |
| 2R | 8459810..8459907 | 878..976 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:14 Download gff for
FMO10971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4346320..4347140 | 1..820 | 99 | -> | Plus |
| arm_2R | 4347202..4347258 | 821..877 | 98 | -> | Plus |
| arm_2R | 4347315..4347412 | 878..976 | 94 | == | Plus |
