FMO10977.5prime Sequence
1116 bp (1007 high quality bases) assembled on 2011-11-18
> FMO10977.5prime
CAGTCGACATGACCGAGGGCAAGAACTTACCCCACTCTAGTGCGGATGTG
CCGTTCCGCAGCAAGGAGCTGCGCAAGCAATCGCTCATCCAGCACACCGG
CCTGGTCGGAGTCATCGATGAGGGCACCAAGACCATCGGTTTCTCCATCT
ACACCACGCCGGACTTCAAGGAGATCGCCGCACACCGGGTGGAGCTGAGC
GTGATCACGCCCCAGGATGGCTGGTATGAGCAGGATCCGCTGGAGATGAT
GGCCTCGATCAACAAGTGCGCCGAGGAGGCCATCAAGCAGCTACCCGAAC
AGGGTTTCTCTGCCAGCGACATTGTCACCGTGGGCATAACCAACCAGCGC
GAGACGACAATCGTCTGGGATGCGGTCACCGGCAAACCGCTGTACAATGC
GCTCCTGTGGAAGGACATCCGCACTAGCACTACAGTGGAGCAGATCGTGG
CCAAGGTGCAGGATCCGAACCACTTCCGCAGCAGCACTGGCCTGCCCATC
TCCACGTACTTCTCGGCCCTCAAGATCCGCTGGCTGCGGGACAATGTGCC
CGAGGTGCGACAGGCCATCCGGGAAAGGCGATGCAAGGCGGGCACAGTCG
ACAGCTGGATCGTCTGGAACTTGACAAACGGAGCTCTCCACATCACGGAT
GTAACGAATGCCTCCCGCACTCTGCTCATGAATCTGGAGACGCAAGCCTG
GGATCCTGTTCTGCTCAAGACGTTCGGTATCAGAGAGGAGATGCTGCCCA
CCATCCACAGCTGTTCGGAGATATTTGGCAAGATCACTTCGGAGCGAAGT
CCACTGCGTGGGATGACCCTAAGTGGAATAATGGGCAACCAGCAGGCCTC
GCTTCTGGGCCAGATGTGCGTGAAGCCGGGTCAAACGAAGAACACCTACC
GATCCGGCTGTTTTCTGCTCTTGCAATACGGGGGACAAGCCGGGTCTTTT
TCCAGGCACGGGTCTGCTTCACCACGTGGCTTACAAACCTCGGTTCCCCA
GGCACCGACGATTTTCGCAATTGGAGGGAACTGTGTCCGGTGCCGGGACA
AGCCTGTCTTGGCTGCAAAACAGGGGGCGAATCTGGCTGACTTCAAATGC
CCAGAAAATATGCGGA
FMO10977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gk-RD | 2260 | CG7995-RD | 119..1223 | 7..1116 | 5005 | 97.5 | Plus |
| Gk-RF | 2483 | CG7995-RF | 343..1446 | 8..1116 | 5000 | 97.5 | Plus |
| Gk-RA | 2318 | CG7995-RA | 178..1281 | 8..1116 | 5000 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1743212..1743835 | 8..631 | 3120 | 100 | Plus |
| 3L | 28110227 | 3L | 1743903..1744349 | 630..1083 | 1620 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:51:10 has no hits.
FMO10977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:49 Download gff for
FMO10977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7995-RD | 113..1188 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:35 Download gff for
FMO10977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 113..1188 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:04 Download gff for
FMO10977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 113..1188 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:04 Download gff for
FMO10977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1743205..1743834 | 1..630 | 99 | -> | Plus |
| 3L | 1743904..1744349 | 631..1083 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:35 Download gff for
FMO10977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1743205..1743834 | 1..630 | 99 | -> | Plus |
| arm_3L | 1743904..1744349 | 631..1083 | 95 | | Plus |
