Clone FMO10978 Report

Search the DGRC for FMO10978

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7441-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10978.5prime Sequence

1116 bp (1006 high quality bases) assembled on 2011-11-18

> FMO10978.5prime
CAGTCGACATGTTCCGATTTGGCAAGCTCCATCGCAGTCTGTCTAAGGTG
GCCAAAAAGGGACAGACAGCTGTGTATTCCCAGCGCCGTTGCATTCAGGC
GAGGAGTTTCTTGCCGGGATTGGCTAGTAGGACGGCTGGAACGCCCTCTG
CGACGGCCCAGGTAACCGGTGGAAACAAGCAGCACGTACACCCCCATGGT
AATTCCGTTAACAGTGGCCACGAAGAACATAACACCCGCTGGCCGAGGAA
AGTCTTTAGTGGCATCCAGCCGACGGGTTCCCTGCATCTGGGTAATTATC
TCGGCGCCGTGCGCAAATGGGTGCAGCTGCAGAATGCTCGTGACGATGTC
ACCGTGTGTATTGTGGATTTGCACTCTATTACCATGCCCCACAATCCGCC
GCTTCTGCGAGAGAACATCTTCACCATGGCCGCCACGTTGTTGGCATGTG
GCATCGATCCCACCAAGAGCACCCTCTTTGTCCAGTCCGCCGTTGCCGAG
CACGCCGAGTTCAATTGGATCCTTAGCTCCTTGACCACCATGCCGCGATT
GGCTCAACTGCCGCAGTTCCGAGAGAAGTCCCGTCTTCTAAAGGATGTCC
CTCTGGGATTGTACGTTTACCCGGTTCTCCAAGCAGCCGACATTATGCTT
TACAAGTCCACTCATGTTCCTGTGGGCGCTGACCAGATTCAGCACATTCA
GCTGGCCCAGCACTTGGCCAGAATTTATAACGGTCGCTATGGCGAGACTT
TCCCTGTTTGCACCGCCATCATTGAGGATGGTGATGCCTCCCGTGTGCTG
TCCCTGCGAGATCCCTCCAAAAGATGTCTAAATCGGAAGCGAATCCCAAG
GCCACCATCAACTTGTGTGACTCGCCCGACTTGATTACGCAGAAGATAAG
AAAGCCGTCACAGACTTTACATCGGGACATTACTTATAATCCTGCAAGCG
TGCTGGCGTCAGCAATCTGGTTCACATCCATGCCCAGGTCACGGGTACAG
AGCATTAGAAGTGGTGAACGAGTCCGCCACCTTGGACACGGCAAGTATTA
TGAACCTTTTGCCGAAGCCTTGTTCAGACACTTGCTTCCGATCCGAGAAA
CGATTACCCATTCATT

FMO10978.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7441-RB 2213 CG7441-RB 154..1248 9..1099 5000 97.7 Plus
CG7441-RA 2477 CG7441-RA 154..1248 9..1099 5000 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17850161..17850590 228..657 2150 100 Plus
3L 28110227 3L 17850777..17851224 656..1099 1570 93.6 Plus
3L 28110227 3L 17849880..17850098 9..227 1095 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:51:19 has no hits.

FMO10978.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:50 Download gff for FMO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7441-RA 179..1294 1..1114 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:39 Download gff for FMO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7441-RA 147..1262 1..1114 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:06 Download gff for FMO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7441-RA 147..1262 1..1114 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:06 Download gff for FMO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17849873..17850098 1..227 98 -> Plus
3L 17850161..17850588 228..655 100 -> Plus
3L 17850777..17851238 656..1114 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:39 Download gff for FMO10978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17842973..17843198 1..227 98 -> Plus
arm_3L 17843261..17843688 228..655 100 -> Plus
arm_3L 17843877..17844338 656..1114 93   Plus