FMO10978.5prime Sequence
1116 bp (1006 high quality bases) assembled on 2011-11-18
> FMO10978.5prime
CAGTCGACATGTTCCGATTTGGCAAGCTCCATCGCAGTCTGTCTAAGGTG
GCCAAAAAGGGACAGACAGCTGTGTATTCCCAGCGCCGTTGCATTCAGGC
GAGGAGTTTCTTGCCGGGATTGGCTAGTAGGACGGCTGGAACGCCCTCTG
CGACGGCCCAGGTAACCGGTGGAAACAAGCAGCACGTACACCCCCATGGT
AATTCCGTTAACAGTGGCCACGAAGAACATAACACCCGCTGGCCGAGGAA
AGTCTTTAGTGGCATCCAGCCGACGGGTTCCCTGCATCTGGGTAATTATC
TCGGCGCCGTGCGCAAATGGGTGCAGCTGCAGAATGCTCGTGACGATGTC
ACCGTGTGTATTGTGGATTTGCACTCTATTACCATGCCCCACAATCCGCC
GCTTCTGCGAGAGAACATCTTCACCATGGCCGCCACGTTGTTGGCATGTG
GCATCGATCCCACCAAGAGCACCCTCTTTGTCCAGTCCGCCGTTGCCGAG
CACGCCGAGTTCAATTGGATCCTTAGCTCCTTGACCACCATGCCGCGATT
GGCTCAACTGCCGCAGTTCCGAGAGAAGTCCCGTCTTCTAAAGGATGTCC
CTCTGGGATTGTACGTTTACCCGGTTCTCCAAGCAGCCGACATTATGCTT
TACAAGTCCACTCATGTTCCTGTGGGCGCTGACCAGATTCAGCACATTCA
GCTGGCCCAGCACTTGGCCAGAATTTATAACGGTCGCTATGGCGAGACTT
TCCCTGTTTGCACCGCCATCATTGAGGATGGTGATGCCTCCCGTGTGCTG
TCCCTGCGAGATCCCTCCAAAAGATGTCTAAATCGGAAGCGAATCCCAAG
GCCACCATCAACTTGTGTGACTCGCCCGACTTGATTACGCAGAAGATAAG
AAAGCCGTCACAGACTTTACATCGGGACATTACTTATAATCCTGCAAGCG
TGCTGGCGTCAGCAATCTGGTTCACATCCATGCCCAGGTCACGGGTACAG
AGCATTAGAAGTGGTGAACGAGTCCGCCACCTTGGACACGGCAAGTATTA
TGAACCTTTTGCCGAAGCCTTGTTCAGACACTTGCTTCCGATCCGAGAAA
CGATTACCCATTCATT
FMO10978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7441-RB | 2213 | CG7441-RB | 154..1248 | 9..1099 | 5000 | 97.7 | Plus |
CG7441-RA | 2477 | CG7441-RA | 154..1248 | 9..1099 | 5000 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17850161..17850590 | 228..657 | 2150 | 100 | Plus |
3L | 28110227 | 3L | 17850777..17851224 | 656..1099 | 1570 | 93.6 | Plus |
3L | 28110227 | 3L | 17849880..17850098 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:51:19 has no hits.
FMO10978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:50 Download gff for
FMO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7441-RA | 179..1294 | 1..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:39 Download gff for
FMO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7441-RA | 147..1262 | 1..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:06 Download gff for
FMO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7441-RA | 147..1262 | 1..1114 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:06 Download gff for
FMO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17849873..17850098 | 1..227 | 98 | -> | Plus |
3L | 17850161..17850588 | 228..655 | 100 | -> | Plus |
3L | 17850777..17851238 | 656..1114 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:39 Download gff for
FMO10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17842973..17843198 | 1..227 | 98 | -> | Plus |
arm_3L | 17843261..17843688 | 228..655 | 100 | -> | Plus |
arm_3L | 17843877..17844338 | 656..1114 | 93 | | Plus |