Clone FMO10979 Report

Search the DGRC for FMO10979

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:109
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12182-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10979.5prime Sequence

1092 bp (985 high quality bases) assembled on 2011-11-18

> FMO10979.5prime
CAGTCGACATGACGAAAGTTACTGAGGGAGAAATTTCACATGGCGTTCAA
GATGTCGGGAAATATTATCTGGATTTTCACCTTCTAGCCAAAGGATTCGT
CCGCCAGGACTCGGTACACGACTTTGTAAACAGCGATTCCGATGGAGACT
TTATAGCACTGAGCGGCTCCAAATCGGAAGTGATCACTCTGGAATTGAGC
AGCAAGTTCATGGTCGTGGATCCCTTTCCGTATTTTGTGGCCATTTATGA
TTCCAACGCTGCGGAAACACGACCTCTGGACGTTTTGGCCAACAAAGTGG
ATCTGGTTGCCATATACGACAGCTGCGATGTCCTGGAGGCACAGCACTTG
GCCCTGGACCCGGCATACACGGCTGTGTGCTCCGTTGCCGTGCCACCAGC
CAGACTAACAGCTGTTAAGCGAGCACCCAAGCTGGCAGCTAATGGAAATC
TCCTCCTGGGCTCCCTCAACACTTATGGATCCTTGAGCCTAATAAACAAG
TCCGCTGAGTACAATCGTTGGAACCCTGTGGAAGGACTAAATATCGCTGA
AACTCTGAGGGACACTCTGCTGCCTGAAGTGGACATCGCCAAGATAAAAG
ACTTTAAGAGCTATCAAGAATATATTAATCCCGCCTGGATCACTATGTTT
GCTTGGTTACCTGATGATGCAGATGCCACTGGCCAGCATGTTTTGGTTCT
GGGAACAGCCGCAGGAAGTTTGTGGTTGCTCACACTAAGCGCCGATGTCA
AAACTCTTTTAAGTCATCAAGAAACGAAAACCTCAATGGGTCGTATCTGC
CATATACAAGCTTTCAAGGACCTTCTACTGGTGGCGATAGCAACGGACTC
ATTCACCTGTACCAATTGCCAGCTAAGGAAATACAGCTCTCGCCTTAGTG
AAGCCCTTGTGGGAGAAAGCCGATCGCCATGGGTTCTGCAATGGCAGTGG
ATCCACTGAATTGTCCCAGAATGGATTGCTATTTATTATACCTGCTGCAA
GGCGGGGCACCCTGCTGACCTGGAGCATGCAGAACGGGGAGACACGAACT
GCCTTCAGCTCCGGAATATGTTCGCGAAAGAAGATACACGCC

FMO10979.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12182-RC 3493 CG12182-RC 257..1303 5..1054 4855 98.2 Plus
CG12182-RA 2368 CG12182-RA 257..1303 5..1054 4855 98.2 Plus
CG12182-RB 2508 CG12182-RB 455..1443 63..1054 4580 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2598108..2599070 1030..64 4315 98 Minus
3L 28110227 3L 2599265..2599323 63..5 280 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 20:51:26 has no hits.

FMO10979.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:51 Download gff for FMO10979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12182-RA 214..1265 1..1054 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:44 Download gff for FMO10979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12182-RA 252..1303 1..1054 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:09 Download gff for FMO10979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12182-RA 252..1303 1..1054 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:09 Download gff for FMO10979.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2598083..2599070 64..1054 98 <- Minus
3L 2599265..2599326 1..63 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:44 Download gff for FMO10979.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2598083..2599070 64..1054 98 <- Minus
arm_3L 2599265..2599326 1..63 95   Minus