FMO10980.5prime Sequence
1084 bp (964 high quality bases) assembled on 2011-11-18
> FMO10980.5prime
CAGTCGACATGGCCAGTATTTCTAAGAGCCGCGCCAGCAGCTGCTCCTCC
AGAAAGAGGCTGCATCTGCAACCGGGATCGCTGCTCTGCGTGATCGTCTT
CTGCCTGCTGGCTTCGTGCTCGGCTCAGCCAATCGAGTCAACCTCATTGC
CTGCAGAAGTGGACGATGTGGAGGGTACCACAATACTTCCCATCCAGTTG
GAGGAGAGTTCACCAACACCAGAACCCATTATCAAGAATGAAACAGCTAC
TGCTCTTCCTGTCGTGGAACTCAAAGTAGCTGAATCTAATCCTGTAGATC
CTGTTGAGGCTACGGATAATTTTGTATCGGTTTACGGCGGAAATCTGGAG
CAGGATATAAAGAACGACGTGAACAGCGAAGTGGAAGATGCGCCCTCTCC
GGTGGAACCAATCATCGAGGAAGTTCAAAAAGTGGCAGAAGCTGAACTTG
AAAATCATGAAATTAAGCTTGCGGTCCAAAGTGCTCGGGAGCCCAAATCC
CTGGATGCTGAAGAGGAGTCAAAGACAATCGATGAAGATCGCTTGGAAAA
TCAAGATAAAGCGGAGACAGTAACGGATAACATTGCCGTTTCCAGTGAGC
AGATGGAGAGCCACATCAGACCATTACCCAACGTGACCAGTGACCTGGTT
TCCGTGATTCTCAACGAAGACAAAGCCATCACTGAGCAACCGATCACCAA
AACGAACCTTCTGGCTTTGGAGCAGGAGCACGAGAAATTCGAGGAAATTG
ATGAAAGTACTACAGTGCCAGTTTATGAGGAGCCCAAGCACCAAGTCACC
AAGAAACAATGCGTTGAGGACCCATCTACCGTTGAAATTCCACCTGAGTA
TCTGACGAACACACTTTGATCCTTCCGAGGAACCCCAGACTGTTCGCGAC
GAACGTAATTTTGAAGAGCCCGACGACAACCAGATGAGATAAATGAGACA
TCATTGAAGGGGAGGGAGCCTCCAGCCAAACGTCAACCACCCGCCAGGTT
CCCTTTGGTTCACGGTGACCACTAAATCGATATCCCGAGCCAATAGGGAA
TTCGAGAAGGCGGAGCTGAGGCTTAGGCGAAATG
FMO10980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtg-RA | 2464 | CG6234-RA | 302..1384 | 9..1084 | 4790 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12651208..12651734 | 469..991 | 2280 | 98.1 | Plus |
| 3R | 32079331 | 3R | 12650814..12651149 | 133..468 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 12648359..12648482 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:51:34 has no hits.
FMO10980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:51 Download gff for
FMO10980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 292..1335 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:48 Download gff for
FMO10980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 294..1337 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:13 Download gff for
FMO10980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dtg-RA | 294..1337 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:13 Download gff for
FMO10980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12648351..12648482 | 1..132 | 97 | -> | Plus |
| 3R | 12650814..12651149 | 133..468 | 100 | -> | Plus |
| 3R | 12651208..12651783 | 469..1043 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:48 Download gff for
FMO10980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8476536..8476871 | 133..468 | 100 | -> | Plus |
| arm_3R | 8474073..8474204 | 1..132 | 97 | -> | Plus |
| arm_3R | 8476930..8477505 | 469..1043 | 96 | | Plus |
