FMO10982.5prime Sequence
1063 bp (970 high quality bases) assembled on 2011-11-18
> FMO10982.5prime
CAGTCGACATGGCCGTTTTTGCGAGCAGATATGAACGGAAATTGCCAATT
GACGACACCCAGGCGCTGAGCTGCGAGATAACCGCCGTCCAGGAGGTCGC
CGGACATACGGAGTACCTGCTGCGCGTGTGGAGGGGCGCCAGCAACAAGA
ACTACTGGACCGTTTTGCGCCGCTATAATGACTTCGACCGACTGGACAAG
TCTCTCCGCGTCTCCGGCATCGAGCTGCCGCTGCCTCGCAAACGCATCTT
TGGTAACATGCGCCCGGAGTTCATAGCTGAACGGAAGCAAGCCCTGCAAG
AGTACATAAACGCCGTACTAATGAATCCCATATTGGCATCCTCGCTGCCA
GCCAAGCGCTTTGTGGATCCCGAGAGTTACTCGCAGTCCTTTCACGACCA
TGCCGTGCAGAATGCTATGCTCTGCCTGCGCAACGACACTACGTGGTCGC
TGGGTGGAAGTATGGGTGCCATAGGCTGGCGCCTCCGGAAGCACTACTTT
AAGGTCACTACAAAGCCGCCGGAGAAGAGCAGCAACAAGCAACTGGTTAA
GAGCGGTTCACAGACCCATCAGAGCAAACATTTCGCCGCTGGGAGCAGCA
ATGGCAGCGGTCACTCCATCGACGCCGGAACCTTGGATCCCGGGTCAGAG
GTGGTGGCTGAGTGGCTGGAGTACGGACCCGACAAGTTTATCGACGAAAA
AGAAATCGGGGGCATAATGAAAAGCCTGATGGGCCTGCAGCATCCGCACA
TCGAGCCCGTTCTCCTGCAGCCCACACCGAAAACGGTTGCCTGGTCATAA
GAAATTCCACAAGCATGGTACTTTAAAGGATGTTTTGTGCATGGCCGCGA
ATCCAAAGAATACATTTCTTAGCAAGTACAGCAATCCCAAGGGCGCACTG
CGCTTTCATGAAACAAGTGGCTACATATGGGAAGCAGATTCTAAAGGCCC
TATATTTTTCCACTCGAAAGGATACGCATATGGTCATCTACATTCCGGAA
ACTATTGATAGTCACGATTGTGTTAAGCTAATGAAATCAGACCTTTTGCT
TGGCGTTCACGTT
FMO10982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RB | 3336 | CG8726-RB | 266..1325 | 9..1058 | 4915 | 98.2 | Plus |
| CG8726-RC | 3470 | CG8726-RC | 402..1360 | 110..1058 | 4410 | 98 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 402..1360 | 110..1058 | 4410 | 98 | Plus |
| CG8726-RC | 3470 | CG8726-RC | 266..368 | 9..111 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7970774..7971183 | 804..396 | 2000 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7971244..7971530 | 396..110 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 7970530..7970713 | 984..804 | 710 | 96.2 | Minus |
| 2R | 25286936 | 2R | 7971636..7971738 | 111..9 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:51 has no hits.
FMO10982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:53 Download gff for
FMO10982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 305..1359 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:55 Download gff for
FMO10982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 259..1313 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:17 Download gff for
FMO10982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 259..1313 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:17 Download gff for
FMO10982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7971244..7971529 | 111..396 | 100 | <- | Minus |
| 2R | 7971637..7971744 | 1..110 | 97 | | Minus |
| 2R | 7970774..7971182 | 397..804 | 99 | <- | Minus |
| 2R | 7970532..7970713 | 805..982 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:55 Download gff for
FMO10982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3858037..3858218 | 805..982 | 95 | <- | Minus |
| arm_2R | 3858279..3858687 | 397..804 | 99 | <- | Minus |
| arm_2R | 3858749..3859034 | 111..396 | 100 | <- | Minus |
| arm_2R | 3859142..3859249 | 1..110 | 97 | | Minus |
