FMO10985.5prime Sequence
1085 bp (979 high quality bases) assembled on 2011-11-18
> FMO10985.5prime
CAGTCGACATGGTCAAGAAGGAGGAATCACGGCTGCCACAAGCTGGTGAC
TTTCAGCTTAAGGAAGGATCAGTCGTGGATGCGACCCGAAAGTACAGTTA
CTTTGATCTGTTCAGATACTCAACCAGATGCGAGCGCTTCCTGTTGGTAG
TCAGTCTGCTGGTGGCCACCGCTGCGTCCGCATTTATTCCCTACTTCATG
ATTATCTACGGAGAGTTCACATCCCTGCTCGTGGACCGAACAGTCGGCGT
GGGCACATCCTCGCCAGCCTTTGCTCTGCCCATGTTTGGTGGCGGTCAGC
AATTGACAAATGCCAGCAAAGAGGAGAACAACCAGGCGATCATTGATGAT
GCGACTGCCTTTGGCATTGGCAGTCTGGTGGGATCTGTGGCCATGTTCCT
GCTCATCACACTGGCCATCGACTTGGCCAACCGGATAGCCCTCAACCAAA
TCGATCGCATCCGAAAGCTCTTCCTGGAGGCAATGCTGCGACAGGACATC
GCCTGGTACGACACCAGTTCGGGCTCCAACTTCGCCAGCAAAATGACAGA
AGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAATAGTGATTGTGG
TATTCCTGATCATGACCTTTGTGATTGGAATAGTGTCTGCTTTCGTCTAC
GGATGGAAGCTCACCCTGGTCGTTCTAAGTTGTGTGCCCTTCATCATTGC
AGCCACCAGTGTGGTGGCTCGACTCCAGGGATCGCTGGCCGAGAAGGAGC
TGAAGTCCTACTCCGATGCAGCCAACGTGGTCGAGGAGGTATTCAGTGGA
ATTCGCACAGTGTTCGCATTCAGTGGTCAGAGAAAGAGAAGAACGCTTTG
GCAAGCTGCTCATTCCCGCAGAGAATACGGGTCGCAGAAGGTCTATACTC
GGGCATGGGGAACGCTCTGTCCTGCTGATCATCTACCTGTGCATGGCCCT
GCCATCTGGTATGTGTGACGCTCATCTGACGAGCGTGATCTCCGATCGCG
TTATACTCCGCCGTCTGGTAATTGTCTGTCGCGTGATCAATGGTGCCCAG
ATCTCGATTGGCCTCTCCCACGTGAGCATTGCGTT
FMO10985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr49-RA | 4240 | CG3879-RA | 231..1316 | 9..1074 | 4775 | 97.1 | Plus |
| Mdr49-RB | 3624 | CG3879-RB | 157..700 | 551..1074 | 2065 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12943707..12944138 | 975..551 | 1725 | 96.5 | Minus |
| 2R | 25286936 | 2R | 12944522..12944767 | 550..305 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 12944826..12945021 | 305..110 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 12945086..12945187 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:13 has no hits.
FMO10985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:55 Download gff for
FMO10985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 221..1268 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:09 Download gff for
FMO10985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 223..1270 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:27 Download gff for
FMO10985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 223..1270 | 1..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:27 Download gff for
FMO10985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12944827..12945020 | 111..304 | 100 | <- | Minus |
| 2R | 12945086..12945191 | 1..110 | 96 | | Minus |
| 2R | 12943641..12944138 | 551..1032 | 95 | <- | Minus |
| 2R | 12944522..12944767 | 305..550 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:09 Download gff for
FMO10985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8831146..8831643 | 551..1032 | 95 | <- | Minus |
| arm_2R | 8832027..8832272 | 305..550 | 100 | <- | Minus |
| arm_2R | 8832332..8832525 | 111..304 | 100 | <- | Minus |
| arm_2R | 8832591..8832696 | 1..110 | 96 | | Minus |
