FMO10987.5prime Sequence
1148 bp (1017 high quality bases) assembled on 2011-11-18
> FMO10987.5prime
CAGTCGACATGCCGGCCAAAGTTAATAAAAAGGAGAATTTAGATGATCTC
AAACAGGAGTTGGATATCGATTTTCATAAAATCTCTCCTGAGGAATTGTA
TCAGCGCTTTCAGACACATCCCGAAAATGGTCTAAGTCACGCCAAGGCCA
AGGAAAACTTGGAGCGCGATGGTCCCAATGCGCTGACGCCACCCAAGCAG
ACGCCCGAATGGGTGAAGTTCTGTAAGAACCTGTTCGGTGGCTTCGCCAT
GTTGCTGTGGATCGGTGCTATTCTCTGCTTTGTGGCCTATTCTATCCAGG
CCAGCACCAGCGAGGAGCCGGCCGACGATAATTTGTATCTGGGTATTGTA
CTTTCCGCTGTCGTCATCGTGACGGGCATTTTCTCATACTATCAGGAATC
GAAAAGTTCTAAGATCATGGAATCGTTCAAGAACATGGTACCCCAGTTCG
CCACCGTCATCCGCGAGGGCGAGAAACTCACGCTGCGCGCTGAGGATCTC
GTTCTGGGCGATGTCGTTGAGGTGAAGTTCGGCGACCGTATCCCCGCTGA
TATCCGCATCATCGAGGCGCGCAACTTCAAGGTGGACAACTCCTCGCTGA
CCGGCGAGTCGGAGCCGCAGTCCCGCGGTGCCGAGTTCACCCATGAGAAT
CCGCTGGAGACCAAGAATCTGGCCTTCTTCTCCACCAACGCCGTCGAGGG
CACTGCCAAGGGTGTGGTCATCAGCTGTGGCGATCACACCGTCATGGGCC
GCATTGCTGGCCTTGCCTCCGGTCTAGACACCGGCGAGACGCCCATTGCC
AAGGAGATCCACCATTTCATCCACCTTATTACCGGCGTGGCCGTGTTCCT
GGGCGTCACCTTCTTCGTGATTGCCTTCATCCTGGCTACCACTGGCTGGA
CGCTGTCATCTTTTTGATCGGTTATCATCGTCCGCCAACGTGCCCGGAGG
GTTCTGCTTGCCCACCGTAACTGTGTGCCTGAACCTTTACCGCCAAGCGT
ATGGCCCTCAAGAACTTGTCTGTTGAAATCTGAGCGTTGAGACCTTTGCC
TCCCATCGACCACTTCTCGATAAGAACCGCACCCTCACCCAACCGAATGA
ACGTCCCCCACTGTTGTTCGAATATCGATCATCTAGGCCGACCACTGA
FMO10987.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RK | 3721 | CG5670-RK | 307..1446 | 9..1142 | 4980 | 96.7 | Plus |
| Atpalpha-RJ | 5545 | CG5670-RJ | 229..1368 | 9..1142 | 4980 | 96.7 | Plus |
| Atpalpha-RI | 4524 | CG5670-RI | 163..1302 | 9..1142 | 4980 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20964255..20964873 | 393..1016 | 2705 | 97.8 | Plus |
| 3R | 32079331 | 3R | 20963927..20964194 | 129..396 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 20963737..20963857 | 9..129 | 605 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 1060..1114 | 75..132 | 130 | 72.4 | Plus |
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 398..451 | 132..76 | 125 | 71.9 | Minus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2860..2890 | 1068..1038 | 110 | 83.9 | Minus |
FMO10987.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:56 Download gff for
FMO10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RE | 488..1486 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:18 Download gff for
FMO10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RI | 223..1221 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:34 Download gff for
FMO10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RI | 157..1155 | 1..1006 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:34 Download gff for
FMO10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20963731..20963856 | 1..128 | 96 | -> | Plus |
| 3R | 20963927..20964193 | 129..395 | 100 | -> | Plus |
| 3R | 20964258..20964863 | 396..1006 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:18 Download gff for
FMO10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16789453..16789578 | 1..128 | 96 | -> | Plus |
| arm_3R | 16789649..16789915 | 129..395 | 100 | -> | Plus |
| arm_3R | 16789980..16790585 | 396..1006 | 98 | == | Plus |
