FMO10988.5prime Sequence
1086 bp (994 high quality bases) assembled on 2011-11-18
> FMO10988.5prime
CAGTCGACATGACGAATAATGCGAAGAAGGAACCCCAGCAAAGGGGCAAG
CATCAGGTGCATAATGTGCGCTTCTACACTATAAAGCCGCGTGAAATTGT
CAGCTTGGCGTATAGTAAATCGAGCAAGTGCCTCGCTCTGAGTCGTGCAA
CACCCGTCATTGAGCTATGGAACCTGGAGCACGCCCCGTATTTGGATCGT
GTAATCCACCTGCCCACCGATTCTCATGTGGAATCTATAGCCTGGGCGGG
AAACCGCTTATTTTCCGTGGATTTAAGTGGTAAACTGATCGAGTGGGATG
TGATTAAGCTAAAACAACGATATGAGCACTCGCCCACTGGCAATGCTCTC
TGGAGTATCGATGTGAATCCCGCGGAAACGGATATTGCCATTGGCTCAGA
GGAAGGGCACATCAACATCCTGAGTATTGAGAATGACGAAATCACCTATA
AATCCCTATTTAACAAGCAAAAAGGTCGCGTTCTCTGCATCAAGTTTGAT
AAGACTGGAACTAAACTGGTGACCGGCACTGAGGGATTTGTTCGCATTTG
GAACGTCCTCAAGGGAACCACTCTGCACACGATGACCCTATCCGAAAAGA
ACGTAATAGTTTGGTCCCTGCAGGTGCTATCCGATAATACGATTATTGCC
GGTGATTCAGCGGGATTTGTTACCGTTTGGGATGCGGATAACGCGACACA
GATAGATTCCACACGAGTTCTGGATAAAAACGTATTTGCCCTGCTGTGAA
TAATAAAGAGGATCGATTAGTTTGCAGTGGAATGCAGCCGCCGCTCATCC
GGATTTTCAGCAAAACCAAGATAAAGCGGGAAGAGTCCACCAGCGAGCGT
TGGATTAAATTCCTACAGCGCGATGCCCACAAACACTATGTGAAATCCCT
GTTGTTATCGACGATCAAATTTATTCGGAAGCAGGATGGCATATTGACCA
TTACGTCCAGTGAACGATGCAGCCACATTTGTCGCAGCATGCTCCCTTCT
GAAGTTCGTAGCCTCCATGGCAATCAGTAAAAGCTTTTGCCTTTGCATTC
CCACAACGTTCCACTTGTGGGCCTGGTTCTGTGGTC
FMO10988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dn-RA | 2314 | CG5018-RA | 111..1200 | 9..1084 | 4930 | 97.7 | Plus |
| l(3)72Dn-RB | 2323 | CG5018-RB | 111..1200 | 9..1084 | 4930 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16227510..16228421 | 1046..145 | 4030 | 97.9 | Minus |
| 3L | 28110227 | 3L | 16228491..16228627 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:36 has no hits.
FMO10988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:57 Download gff for
FMO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5018-RA | 63..1119 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:22 Download gff for
FMO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RB | 111..1167 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:37 Download gff for
FMO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RB | 111..1167 | 9..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:37 Download gff for
FMO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16227512..16228420 | 146..1044 | 98 | <- | Minus |
| 3L | 16228491..16228627 | 9..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:22 Download gff for
FMO10988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16220612..16221520 | 146..1044 | 98 | <- | Minus |
| arm_3L | 16221591..16221727 | 9..145 | 100 | | Minus |
