FMO10990.5prime Sequence
1104 bp (975 high quality bases) assembled on 2011-11-18
> FMO10990.5prime
CAGTCGACATGCCGTCGCTGCGCCAGAAAGTCACCACTTACTTCCGCCAG
TTGAGCTTCATCGCGGAGCCTCGCGAGGGTCGCCGGCGGGCCAGCGAGCA
CGAGGATGATGATGGTAGCTTCATAACTAAATATCTGGAGGGCCGAATGC
AGCGTCAGTTTGTTGAGGGTCCGGAGATTTACAATGGCCAGAATCCCACG
GACATGCCCGTTCTCAAGTTGGATACATACGAAGCTGGAAACTGCTCTAT
AACAGCCGCCTGCACAGGTCCTGACGAGGGGCTCACCGGCATCAAGCGCT
CCAAACTGCACTTGAGCACCAGCTTCGCGGATGACATTGACTTCATAGAT
ACGCAGCAGGAGAACGATGATTGCTATGGCGTTAGGAGGAGTACACCACC
AGTTCAGGTGGCCACACAGAACTCAACCCGACTTACCAGCAAATTCGTAC
GGCCGCCGGCAGGACCTCGCAGACAGAGCAGTGCGGAGCAGCCCTCCGGA
TCTGCTTCTGCGTCGGGAATGCGTTCCCGCAAGAATTCCAAAAGCAGCAT
AGCCAATCTGGCCGCTGCGTCTGCTGGCACGGATGCTGGAAAAGCCAACA
GCGATCAGAACAATAGGAATGTGTTAAATGCAAAGACTGAGGTCTCGACG
GATGGGGATCCCAACTCAGAGCGGGAACGTTTGCTCCGCGAAGCTGTAAG
CAACCAGGGTGGCTCTGATCCCGCAGCTTTGATCGCTGGCGTGGAGAACT
GGCGCATGGAGTGCGACTTCGCATATGGTATCTCGGTGTCCCTCTACGAG
ACCAACATGCTGACTAAAGAACCCATGGGCAATCCCATCGCCGACTGCTA
CGGAATGGTAGTGCGCGGAGACTCAGCTGCCATGGCCATGGCAGATGGTG
TCAACTGGGGTGATGGCGCCTCGTCTGGCCGCCCGTTCAGCTGTCACGGT
TGTTTGGACTATCTGGACGGGCGGTCTTCCGGACAGGCGCTGGAATGCCG
GCCACCCAACCAGAGTTTTTGTGAGTTTGCTTGGATAGCCTTGGGAGGAA
CCGTGTTATCCTGAAGTTGAGGACCATATCTCTCTCACATACGTTGTGCC
TGCC
FMO10990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9801-RC | 3294 | CG9801-RC | 331..1435 | 9..1099 | 4915 | 97.4 | Plus |
| CG9801-RB | 3327 | CG9801-RB | 364..1468 | 9..1099 | 4915 | 97.4 | Plus |
| CG9801-RA | 3476 | CG9801-RA | 513..1617 | 9..1099 | 4915 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8737851..8738709 | 1000..142 | 4075 | 99.3 | Minus |
| 3R | 32079331 | 3R | 8738778..8738911 | 142..9 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:43 has no hits.
FMO10990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:57 Download gff for
FMO10990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RC | 306..1350 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:26 Download gff for
FMO10990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..1557 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:41 Download gff for
FMO10990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..1557 | 9..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:41 Download gff for
FMO10990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8737798..8738708 | 143..1048 | 98 | <- | Minus |
| 3R | 8738778..8738911 | 9..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:26 Download gff for
FMO10990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4563520..4564430 | 143..1048 | 98 | <- | Minus |
| arm_3R | 4564500..4564633 | 9..142 | 100 | | Minus |
