FMO10993.5prime Sequence
1132 bp (988 high quality bases) assembled on 2011-11-18
> FMO10993.5prime
CAGTCGACATGTCTTGGACCGCTTCAGTTTTCTTGAGGACTTCCACCACT
AGCATGAAGTTTCTGCGTCTGCGCTGGCCTCTCCCCAGAATTCCCCAGAA
TAAATCGGCAAACGTTGCGCCGCGTTTCAGAAGCAAATCAGCAGTCAGCC
AGCTCTCATCTGGATTTAAATTTGTGCAGATCCGCAAAAGTACTTGTGAC
AGCAACGAGATGACCATCAAAGCGATCAAGGCCCGTCAGATCTACGACTC
CCGTGGCAACCCCACCGTGGAGGTCGACCTGACCACCGAGCTGGGACTCT
TCCGCGCCGCCGTGCCCTCCGGCGCCTCCACTGGCGTCCACGAGGCCCTG
GAGCTGCGCGACAACGACAAGGCCAACTACCATGGCAAGTCGGTGCTGAA
GGCCGTGGGCCATGTGAACGACACCCTGGGCCCCGAGCTGATCAAGGCCA
ATCTGGATGTGGTTGACCAGGCGTCCATTGACAACTTCATGATCAAGTTG
GACGGCACCGAGAACAAGAGCAAGTTCGGAGCCAACGCCATCCTGGGCGT
TTCCCTGGCCGTGGCCAAGGCTGGAGCCGCCAAGAAGGGCGTGCCGCTGT
ACAAACACATTGCCGATCTGGCTGGCAACAAGGAGATCATCCTGCCGGTG
CCCGCTTTCAACGTGATCAACGGCGGCAGCCACGCCGGCAACAAGCTGGC
CATGCAGGAGTTCATGATCCTGCCCACCGGCGCCACCAGCTTCACAGAGG
CCATGAAGATGGGCTCCGAGGTGTACCACCACCTGAAGAATGTGATCAAG
GCCAAGTTCGGTCTGGACGCCACCGCCGTGGGCGATGAGGGCGGCTTCGC
CCCAACATCCAGTCCAACAAGGAGCTCTGAATCTGATCAGCGATGCCATC
GCCAAGCCCGATAACACCGGCCAAGATCGAGATCGGCATGATGTTGCCCG
CCTCCGAGTTCTAACAGATGGCCAGTACGATCTGGACTTCCAGAACGAAA
AAGAACCGACAAAGTCCGATGCTGCCCGCCGAACAGCTGGCCCAACTGTA
CCAAGAGTTTATCAAGACTTCCCCCATCGTTCTCGATGAGATCCCCTTGA
ACGGAACACACTGAGCCCTGTCCCACTGAACC
FMO10993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eno-RD | 2198 | CG17654-RD | 328..1422 | 8..1100 | 4735 | 96.4 | Plus |
| Eno-RC | 2257 | CG17654-RC | 387..1481 | 8..1100 | 4735 | 96.4 | Plus |
| Eno-RE | 2664 | CG17654-RE | 588..1682 | 8..1100 | 4735 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1725771..1726656 | 1080..196 | 3590 | 95.2 | Minus |
| 2L | 23513712 | 2L | 1727646..1727834 | 196..8 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:55 has no hits.
FMO10993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 09:59:28 Download gff for
FMO10993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eno-RC | 374..1472 | 1..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:21 Download gff for
FMO10993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eno-RE | 579..1677 | 1..1095 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:14 Download gff for
FMO10993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eno-RE | 579..1677 | 1..1095 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:14 Download gff for
FMO10993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1725852..1726655 | 197..998 | 97 | <- | Minus |
| 2L | 1727646..1727837 | 1..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:21 Download gff for
FMO10993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1725852..1726655 | 197..998 | 97 | <- | Minus |
| arm_2L | 1727646..1727837 | 1..196 | 97 | | Minus |
