FMO10996.5prime Sequence
1115 bp (1028 high quality bases) assembled on 2011-11-18
> FMO10996.5prime
CAGTCGACATGGCGTGGAAAATGGGAGGAAACCGGGCCGCAACGCTGGCG
TTGCTCTTCGCCAGCAGTTTGCTGCTGCTGAGTGCGGCCAATGCCGCCGA
TTTGGACACGGAGTCGGACGACTTCGAGGATGGTTATGTGGAGGATGTGC
AGGAGGAGCCCGCCGTCATCGGTGGCGATGAGAAGCTGGCCTACGAGAGC
CCGGTTATCGATGCCAAGAAGTTCCACTTCGCGGATCACTTCGACGACGT
GGAGGAGTCCAGGAAGAGGTGGGTGCTGTCGCAGGCCAAGAAGGACGACA
TCGCCGAGGAGATCTCCAAGTACGACGGCATCTGGAACTGGGAGTCGCCG
CAGCGCATCGTTTGGGCTAACGACTTGGTTCTGGTGCTCAAGTCGAAGGC
CAAACACGCGGCCATAGCCGCCCCCCTCCGCAAACCGTTCGAGTTCAAGT
CGGACAAGCCGCTGGTGGTGCAGTACGAGGTCACGTTGCAGGAGGGTCAG
GAGTGCGGTGGCTCGTATCTGAAGCTTTTGTCCGCCGGAAAAGACACGGA
GCAACTAAAAGCGTTCAATGACAAGACACCCTATACCATCATGTTTGGAC
CGGACAAGTGCGGCAACGATGTGAAAATGCACTTCATATTCCGGCACGTC
AATCCAATTAATGGCACCATCACCGAGAAGCACTGCAACAAGCCAAAGAA
CCGTTTGGAAGAGCCATTTCAAGGACAAGCTACCCCATCTCTACCAGCTG
GTGGTCCGTCCCGATAACAGCTTTGAGATTCGCGTTGACCACAAGATCAT
CATGAGGGTTCCCTGCTAACCGATTTCAAGCCACCAGTCACCCGCCGGCA
GAGATCGACGACCCCAATGACCACAAGCCCGAATCGTGGGATGAGCGAGA
GAGATCCCAGATCCCCACTGCCCACCAGCCCGAGGATGGGGATGAGGATG
CCTCCACCCCAGTTGCCGATACCGATGCCGTCATGCCAATGGCCTGGCTC
GAAGATGAGCCCGACATGAATTTCGATCCACCTGCCACCCAAACCGAAGG
ATTTGGAATGCCGAATCGAATTGCGAGTGCAGAGCCTCCATTGGGTGGAC
AATTCTCAATGTGCC
FMO10996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnx99A-RE | 2620 | CG11958-RE | 225..1316 | 9..1103 | 4965 | 97.6 | Plus |
| Cnx99A-RD | 2092 | CG11958-RD | 225..1316 | 9..1103 | 4965 | 97.6 | Plus |
| Cnx99A-RB | 2623 | CG11958-RB | 225..1316 | 9..1103 | 4965 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16524225..16525138 | 1049..137 | 2720 | 88.2 | Minus |
| X | 23542271 | X | 12177677..12178607 | 950..9 | 2610 | 86.6 | Minus |
| 3R | 32079331 | 3R | 29318273..29318617 | 492..148 | 1710 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29317161..29317511 | 1047..698 | 1270 | 95.2 | Minus |
| 3R | 32079331 | 3R | 29319230..29319374 | 153..9 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 29317835..29317970 | 698..563 | 680 | 100 | Minus |
| X | 23542271 | X | 20875117..20875303 | 77..263 | 500 | 84.5 | Plus |
| 3R | 32079331 | 3R | 29318069..29318142 | 563..490 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:13 has no hits.
FMO10996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:00 Download gff for
FMO10996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RC | 235..1296 | 3..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:42 Download gff for
FMO10996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RB | 219..1280 | 3..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:52 Download gff for
FMO10996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RB | 219..1280 | 3..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:32:52 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:04:42 has no hits.
