FMO11001.5prime Sequence
1121 bp (1027 high quality bases) assembled on 2011-11-18
> FMO11001.5prime
CAGTCGACATGCATACGCCGCCCTTTAAATCCAATCGATTCCCCTTCGAG
GGCAGCCAGGTGCGAGTTCTGCTCTACAAAGAGGATGATACTCGGCGATT
GCTCTTCGACTCGAATGCCCTCCAGAAGGTGATGCACAAGGACCAATCGG
CCACATCCGCATCCATATCATCGACCAGTACGAGTGGCGGGGGAAAGTTC
CTTAAGAATGAGAAGTACACATCGCTGCAGAATGGCAAGATTCCGTCGAA
GTCACATTCCAGCAATGGTAGCAATTTCATCGAGGTGTGCGCAGAGTACG
GCTATAAGCACAATCGACCCTCGGGAGCCGACATCACGCCGGTGGGCGAA
ATGGTGTTTGGCTCGTTGCCGATGTCCTTTTGCGGAACGGCTCTGAAGGT
GCACTGGCTGCCGGAACCGTCCAGAATCCTGTGCTCCCAGGTCTACCTGA
CGCCCACCAGTAATGGAGGATCTGGCCACTCGCCGTACTCTACGCTCTCC
ACGAATAGCCTGGCGACGCCGCGCACATCGATATGCAGCGAGCATGGATC
CATGGATGGTCTCTCGATGAACTCGTTCTCAATGCCGTTCAGCGTGAGTG
TAGGTCGGCAGATGAGCCTGACGCCACCGCTGGACGTTCCGGCGACGCCG
GCTGATCAGCAGTCACTGTCGATTCATTCGATCGACTCCAGCGGTCCTCG
ATACTCATCAACATACAGCACTGCCACGGATTCGGGCTATTCGGCCAGTG
GGAGTGGCAGTGCAGCTGGAGGGGATCAGTGGTCATATCAGTACTCATCC
ACGCGCAGCAGTTTGGGCAGTGTCCTCTCGGATCAGTCGGATGCAATGCG
GAAGCTGAGCATGGACTTGGCGTGCTATACGGGGTCTCCTTACCTGGAAG
GGATTTGCCAGCGATGGCTGCCTGCAGCGAAGATCTCGCGTAATTTGCCG
CACCTCCTTCGAGAACGAGCATTCCAAGAACCGATTTTATCCGGCCTTTC
TTAGCGACATACGCATTGAATGACCCTGGTGTAGCACCAGCCAGGAAGCG
GAGCCTGGAAGGGGGCAGCGAGTGGTGGCCATGCCCTCCACCGACAGTAT
CGACGAGCGGCTATTGGTGCG
FMO11001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RC | 5092 | CG3764-RC | 242..1345 | 8..1116 | 5080 | 97.9 | Plus |
| CG3764-RA | 5195 | CG3764-RA | 345..1448 | 8..1116 | 5080 | 97.9 | Plus |
| CG3764-RB | 6001 | CG3764-RB | 1178..2254 | 35..1116 | 4945 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16998817..16999549 | 1041..307 | 3285 | 98.2 | Minus |
| 3L | 28110227 | 3L | 16999739..17000012 | 308..35 | 1370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:44 has no hits.
FMO11001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:52 Download gff for
FMO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 253..1366 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:31 Download gff for
FMO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 339..1452 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:28 Download gff for
FMO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 339..1452 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:28 Download gff for
FMO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16998741..16999547 | 309..1121 | 97 | <- | Minus |
| 3L | 16999739..17000012 | 35..308 | 100 | <- | Minus |
| 3L | 17001516..17001546 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:31 Download gff for
FMO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16991841..16992647 | 309..1121 | 97 | <- | Minus |
| arm_3L | 16992839..16993112 | 35..308 | 100 | <- | Minus |
| arm_3L | 16994616..16994646 | 1..34 | 91 | | Minus |
