Clone FMO11002 Report

Search the DGRC for FMO11002

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:2
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12582-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11002.5prime Sequence

1126 bp (1000 high quality bases) assembled on 2011-11-18

> FMO11002.5prime
CAGTCGACATGAAGTACGGATGCGGATTACTCAGGAATGGCACCACGGGC
GCTGTTATGGTCGGATTAGTTTGTGGCCTTTATGTTTGCAGCGGCCAATG
TGATAAGGTGGAAGTAATAGAGCTGAGCAATTGGACGATAACTAATCAGA
ATGGCTCCCTGACTATTGCCAACCAAACGTTGCCCTTGGGCATATACAGT
GCCTTCGCACCCCAAGTGCTGGACTCCTACAACGACGTCGGTCTGCGTTA
CTTGGCCTACGACAACTTTACCTTCTCCAATTTCTTTCAGTTCGACGTTC
ATCACTTCAATCGCGGCCACATCAACCTGACGTTTCACGGCATTGACACG
GTGTCGGAAATCCGGCTGAACCATCAACTGCTGGGACGCACGGACAACAT
GTTTGTCCGCTACTCTTACGAAGTGAGTTCCCTGCTCCAAGCGGAAAACT
TTCTGGAAGTTGAGATCCAATCTCCAGTTGTGGCTGCTTTGGCAAGAGCC
AATGCTTTAAAAGAAGCTAAAAAGAGCGTGCCTCCCGAATGCCCCAACGA
GCGCTACCATGGTGAGTGCCACATGAACATGCTGCGGAAGATGCAGGCTA
GCTTTTCCTGGGACTGGGGTCCTGCAGCTCCCTCTGCTGGAATCTGGAAA
AACGTGGAGCTGGAAATCTACGAGGTGGCGGTTATTCGTGAGGTGGATGT
GGACGTTAGCCGCGTCAATGGTTCGTACTGGAACATGCATATTCGCTGCT
TCCTGGACGCGGGAGGCTGGCAAAACTTCAATGGAAGACTCGTCCTATAT
GCTGTCGAGCTATTGGACCGTCCGGTAGTAGTAGACAGATACGCAATAAA
AAACATCAGTCACTTGGCGCCAGTAATTGAATTCGATCAGCCGTGCCAAA
TGGGAAAGTCGTAACCTGGTGGCCCATGACTACGCGAGCAGAACTGTATC
CGCTCCACTTCACTCTGAGACTGGCTGGGACCTGATGGACCGGAGATCGC
TCTAGACCAAGTCCGCCAGTCGCTCCGAGTGGGGTTTTCGTACGCTGATC
TAGTAAGGATCCGCCCCTGACGGCGTTGTAACACCTCCTGCTGCAGCTAT
GATGTAGAATGTTTATGAAAGGCAGT

FMO11002.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12582-RD 2922 CG12582-RD 96..1230 8..1126 5080 97.5 Plus
CG12582-RH 3029 CG12582-RH 210..1343 9..1126 5075 97.5 Plus
CG12582-RA 3035 CG12582-RA 210..1343 9..1126 5075 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4198259..4198772 292..805 2570 100 Plus
3R 32079331 3R 4197415..4197562 9..156 740 100 Plus
3R 32079331 3R 4197737..4197871 157..291 675 100 Plus
3R 32079331 3R 4198830..4198927 806..902 440 99 Plus
3R 32079331 3R 4199005..4199191 902..1078 270 89.9 Plus
Blast to na_te.dros performed on 2014-11-27 20:53:41 has no hits.

FMO11002.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:01 Download gff for FMO11002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12582-RA 101..1242 1..1126 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:54 Download gff for FMO11002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12582-RD 89..1230 1..1126 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:02 Download gff for FMO11002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12582-RD 89..1230 1..1126 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:02 Download gff for FMO11002.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4197407..4197562 1..156 97 -> Plus
3R 4197737..4197871 157..291 100 -> Plus
3R 4198259..4198772 292..805 100 -> Plus
3R 4198830..4198926 806..901 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:54 Download gff for FMO11002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23129..23284 1..156 97 -> Plus
arm_3R 23459..23593 157..291 100 -> Plus
arm_3R 23981..24494 292..805 100 -> Plus
arm_3R 24552..24648 806..901 98 -> Plus