FMO11002.5prime Sequence
1126 bp (1000 high quality bases) assembled on 2011-11-18
> FMO11002.5prime
CAGTCGACATGAAGTACGGATGCGGATTACTCAGGAATGGCACCACGGGC
GCTGTTATGGTCGGATTAGTTTGTGGCCTTTATGTTTGCAGCGGCCAATG
TGATAAGGTGGAAGTAATAGAGCTGAGCAATTGGACGATAACTAATCAGA
ATGGCTCCCTGACTATTGCCAACCAAACGTTGCCCTTGGGCATATACAGT
GCCTTCGCACCCCAAGTGCTGGACTCCTACAACGACGTCGGTCTGCGTTA
CTTGGCCTACGACAACTTTACCTTCTCCAATTTCTTTCAGTTCGACGTTC
ATCACTTCAATCGCGGCCACATCAACCTGACGTTTCACGGCATTGACACG
GTGTCGGAAATCCGGCTGAACCATCAACTGCTGGGACGCACGGACAACAT
GTTTGTCCGCTACTCTTACGAAGTGAGTTCCCTGCTCCAAGCGGAAAACT
TTCTGGAAGTTGAGATCCAATCTCCAGTTGTGGCTGCTTTGGCAAGAGCC
AATGCTTTAAAAGAAGCTAAAAAGAGCGTGCCTCCCGAATGCCCCAACGA
GCGCTACCATGGTGAGTGCCACATGAACATGCTGCGGAAGATGCAGGCTA
GCTTTTCCTGGGACTGGGGTCCTGCAGCTCCCTCTGCTGGAATCTGGAAA
AACGTGGAGCTGGAAATCTACGAGGTGGCGGTTATTCGTGAGGTGGATGT
GGACGTTAGCCGCGTCAATGGTTCGTACTGGAACATGCATATTCGCTGCT
TCCTGGACGCGGGAGGCTGGCAAAACTTCAATGGAAGACTCGTCCTATAT
GCTGTCGAGCTATTGGACCGTCCGGTAGTAGTAGACAGATACGCAATAAA
AAACATCAGTCACTTGGCGCCAGTAATTGAATTCGATCAGCCGTGCCAAA
TGGGAAAGTCGTAACCTGGTGGCCCATGACTACGCGAGCAGAACTGTATC
CGCTCCACTTCACTCTGAGACTGGCTGGGACCTGATGGACCGGAGATCGC
TCTAGACCAAGTCCGCCAGTCGCTCCGAGTGGGGTTTTCGTACGCTGATC
TAGTAAGGATCCGCCCCTGACGGCGTTGTAACACCTCCTGCTGCAGCTAT
GATGTAGAATGTTTATGAAAGGCAGT
FMO11002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12582-RD | 2922 | CG12582-RD | 96..1230 | 8..1126 | 5080 | 97.5 | Plus |
CG12582-RH | 3029 | CG12582-RH | 210..1343 | 9..1126 | 5075 | 97.5 | Plus |
CG12582-RA | 3035 | CG12582-RA | 210..1343 | 9..1126 | 5075 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4198259..4198772 | 292..805 | 2570 | 100 | Plus |
3R | 32079331 | 3R | 4197415..4197562 | 9..156 | 740 | 100 | Plus |
3R | 32079331 | 3R | 4197737..4197871 | 157..291 | 675 | 100 | Plus |
3R | 32079331 | 3R | 4198830..4198927 | 806..902 | 440 | 99 | Plus |
3R | 32079331 | 3R | 4199005..4199191 | 902..1078 | 270 | 89.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:41 has no hits.
FMO11002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:01 Download gff for
FMO11002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12582-RA | 101..1242 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:54 Download gff for
FMO11002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12582-RD | 89..1230 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:02 Download gff for
FMO11002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12582-RD | 89..1230 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:02 Download gff for
FMO11002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4197407..4197562 | 1..156 | 97 | -> | Plus |
3R | 4197737..4197871 | 157..291 | 100 | -> | Plus |
3R | 4198259..4198772 | 292..805 | 100 | -> | Plus |
3R | 4198830..4198926 | 806..901 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:54 Download gff for
FMO11002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23129..23284 | 1..156 | 97 | -> | Plus |
arm_3R | 23459..23593 | 157..291 | 100 | -> | Plus |
arm_3R | 23981..24494 | 292..805 | 100 | -> | Plus |
arm_3R | 24552..24648 | 806..901 | 98 | -> | Plus |