Clone FMO11005 Report

Search the DGRC for FMO11005

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:5
Vector:pMK33-CFH-BD
Associated Gene/Transcriptboi-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11005.5prime Sequence

1145 bp (1064 high quality bases) assembled on 2011-11-18

> FMO11005.5prime
CAGTCGACATGGCTGAAATCAGGCTAGTTGTGGTTCTACTGGTCCTTATG
ACCACCTGTATCTATACACTTCAAGCCAGTGACAGTAATTCCTCCGTGGC
AACCACCTTGGGCGTTTTGTTCGAGAGGGCTCCCGAATCAGCGGTGGCCC
CGAAAGGAGATGAGGTGGTATTCGAGTGCGAGCTGAATCTGAAACCTGAT
CGCCTGGAGTGGCGGTTTAGACGTGGTGATTCCTCGGAGCCCTATCTATA
CCTAAGGCCCTCGGCTGGCTATAACGTGACCAGCGGAAGCGATGGTCTTG
CCTGGAGACTGCGCATCTATGTGAGTGCCCAAACGGCTGGGGACTACCAG
TGTGTGGCTTGGTATGGCCCGGGTGCACTGGCTTCCACGCCAGCCCGCTT
GGCCTTGGTCTCGATTGCTTTGGACGTCGGCCAGGGATCCATGGGGGCCA
GGAGCTCCATCCGCTGGAGCGTGGCGCCCAAAAACTGCCTGCTCATTCGT
TGCGGCAGCGTAATATCGAATCCGCCGGCTATTTGGAGCTTCTACAGAAA
CGGAAAGAAGCTACCTCAATCGGAGCTGCTGCCTGGCGCTGCGGGGGCAT
TGGTTTTGGATACGGTCACCGCCAAAGATGCGGGTAACTACTCGTGCGTG
GCCACGAACTCCATAACAGGCGATGAACTTAGGCTCCCCCAAACTATTGA
ACTAAGAGTGGACTACACAGATAGGACACCTCCGTACTTTCTACAACGTC
CACCCATCGAATACTCAGCTCGTCCCGGAGAAACAGTGGTGCTCGAGTGT
CCTGGCGTGGATCCCCACGACCCCGAGTCATTTGGAGTAGTCCCAATGTG
GTTGAGATCTATAATAATAGAAGCACCATCCTGTCCTACGGCCTGCAAAT
CACCGATGTGAAGCCCGAGGATCAAGGTTCCTATATCTGCATGCTGGACA
ATGGTATTGCACCACCGATCGATCACACCATCAGTTGAGTGTTTTGCAGC
GGCCCACGATCTTAGAGGACGGCCGCCACTCTGACGAATGAAAGCAATTC
ATTGCTGCTGGAATGCTCCGCCTCGGGCATCCCAAACGAATTTTATTGAC
TATTAAACGTGAGGATGCCCAAGATCGAGGGCTGGTGATACCGGA

FMO11005.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
boi-RG 4544 CG32796-RG 343..1461 9..1119 5210 98.1 Plus
boi-RF 4509 CG32796-RF 629..1747 9..1119 5210 98.1 Plus
boi-RE 4316 CG32796-RE 436..1554 9..1119 5210 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2451057..2452129 1077..9 5075 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 20:53:56 has no hits.

FMO11005.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:03 Download gff for FMO11005.5prime
Subject Subject Range Query Range Percent Splice Strand
boi-RE 389..1479 1..1087 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:02 Download gff for FMO11005.5prime
Subject Subject Range Query Range Percent Splice Strand
boi-RE 429..1519 1..1087 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:09 Download gff for FMO11005.5prime
Subject Subject Range Query Range Percent Splice Strand
boi-RE 429..1519 1..1087 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:09 Download gff for FMO11005.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2451046..2452133 1..1087 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:02 Download gff for FMO11005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2345079..2346166 1..1087 98   Minus