FMO11006.5prime Sequence
1083 bp (957 high quality bases) assembled on 2011-11-18
> FMO11006.5prime
CAGTCGACATGAACTTCGATTACATCGGCCAGGCCCTGGGCTACCACGGG
CAGCCGCTCCAGAAGATCTGGGACGACGAGCGCGGCGTGGACGACCTGCG
GCTGATGGGACTCACCCAGGTGAACTACGGGGTCTACCAGGAGCGGCAGA
AGTACTTCACCTTCCAGGAGCGGGCTAAGCGATTGAAGATGCACCAGTTT
CTGGCCAGGAAGGCCACCGATTTGTATGATCGCACGCTGGTGGCCAATGT
TATGGAGGATTCCCTGCTGGCACAAGGCAACACATACATGACTCAGATGG
CCCCCTTCGAGTTCTTCCTCAATGTGAAGGACAAACGCAAGGGATGGGCG
CACCGATTGTCTGCACTGAAGCAGGGCGACATCATCTACACGCAGGTGAC
ACGGCTGGCCAGCGGCAACCGGCTCATAGTGAAGCCACTCTGCACTGCTG
AGCCCAAACACGCCTACTTGGCTGACATTCCCATAAAGGCCGTGATCCTG
CAGGACTTCTGGGGTCCCTTGCCCCTGGACAAGCAGGGCAATCCGCGCAG
CTTTGTCCAGAATGACATCTTGCGCTGTGAGATAAACAACATATCCGCGG
ATACCGAGCGGCTCTCTCTGAACATGATCGGCATGTTCAATAAGGTGCCG
GATTTAAAGTTTGGTCTCTGCGACTTTAAGGAGTTGCCCAAGTATTATAG
TAAAATACATAACCTGGATCATCCATCTGCGTCTCACTACGAGGATGAGC
TAAACAAAGCCTTAGAGTTTGAAAATCCCAACTACGATTTGCTGTTCCAA
ATGAACGGACTGCAGCCCAAACGAGAATCTGTCACTGATGTCATATTTAA
TGGCGGGATTCCCGGAGAGAGAACGCCGCGGAGTTGCGACAGAGCAGCCT
CCCAGTGGGCCTTCGCTCGTGCTGATGCATCGAACACTTAGAACGGCCAC
AGTCGAGGCTTTCAGTGCCTGAACAAGCCTAAACATGATCGCGCAATGTT
GAGCGCTGGTGGCCGCGTGCTCTACGCGAATCGCGCAGCCTTCCTAAAGC
TGCAGACTTTGGAAGCTCTGCACCTGACAGATC
FMO11006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6621-RB | 3103 | CG6621-RB | 350..1445 | 9..1077 | 4745 | 97.1 | Plus |
| CG6621-RA | 3115 | CG6621-RA | 350..1445 | 9..1077 | 4745 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10892914..10893182 | 277..9 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 10892639..10892853 | 489..275 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 10892363..10892576 | 700..487 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 10892087..10892306 | 914..698 | 860 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:04 has no hits.
FMO11006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:03 Download gff for
FMO11006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RB | 341..1453 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:06 Download gff for
FMO11006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RA | 342..1454 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:11 Download gff for
FMO11006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RA | 342..1454 | 1..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:11 Download gff for
FMO11006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10892085..10892303 | 701..915 | 96 | <- | Minus |
| 3R | 10892363..10892574 | 489..700 | 100 | <- | Minus |
| 3R | 10892640..10892851 | 277..488 | 100 | <- | Minus |
| 3R | 10892915..10893190 | 1..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:06 Download gff for
FMO11006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6717807..6718025 | 701..915 | 96 | <- | Minus |
| arm_3R | 6718085..6718296 | 489..700 | 100 | <- | Minus |
| arm_3R | 6718362..6718573 | 277..488 | 100 | <- | Minus |
| arm_3R | 6718637..6718912 | 1..276 | 98 | | Minus |
