Clone FMO11007 Report

Search the DGRC for FMO11007

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30015-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11007.5prime Sequence

916 bp (902 high quality bases) assembled on 2011-11-18

> FMO11007.5prime
CAGTCGACATGTCTTCCGGCCTGATGTCGTGTGTAAGGGAAAACTCGCCG
CCGCTGGAATCGGAGTTGGATGCCAGCTGCGCCGGGGGACCATTGTCATT
GCCGGCGGGCCGCGCCCACCCGCACACCCACGGCGCCACCTCAACGCCCA
TCTCCAGTCCAGGAAACGATGCCCATCAGTCCCCGACCGCCGAGCATCCA
AATCAGCAGCAGCAACAGCAGCAGCAGAAGCGTCGTCGTTTCCATCCGCT
TCGTAACCTGCGTCGCATCTTCCGGCGACGTACGATTAATAGCTCCACGG
ACAGTCCAGCATCCTGTCAGTCGCCAGGACCCGGATCCTGCAACACCTTG
CCACCGCCCGCCAGCAGCAGCAGTGAGAAGAATCTGCGCAGCGGGATCGC
CTCGCCAACAGGATCTCCCCTGAATCCCCAGCAGCTGAAGGAGAACTACC
AGACGCAATCGCTGCCCAAGTCCAAATCGTACGGTTCGCATCGCGATGAG
CTGCTAAGTGTGCTTCTGGGCAAAAAACGGGCCAGCAAGCAGGACCACAG
CCAGGTTGCAGTCCAACCCGATTCCCAAGCGCAGTCGCAATCGCCGCAGG
AAGCCATGTACCAGGCCCAGCGACAGCATGGCGGCGTGGCCGTCTTCCCG
GATTCACTAGTCCTTAACCGGAGCAGCTACTTTGCCGAGCAGAGAATCCA
ACAGCGCCATCTACGCAGCGTGGGTGACTCCTCGCAGGAACTGGAGTCCA
ACCTATGCTTGGGATCACGATCAGGATCAGGATCCGGAGCTGGTGGCGCC
GCTGACATCTCCGACAGCCAGCGTAGCCCTCAGCGAAGGTCGACTCCTGG
ATGTGGACGGGGATTACCTCTCGGGATACCCTGTCCCAGTCACATGACAG
CGTTCTTCTCTGAATC

FMO11007.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30015-RF 5363 CG30015-RF 172..1078 7..916 4445 99.5 Plus
CG30015-RE 5965 CG30015-RE 631..1536 8..916 4440 99.4 Plus
CG30015-RC 6386 CG30015-RC 1052..1957 8..916 4440 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10848593..10849261 861..192 3270 99.6 Minus
2R 25286936 2R 10856124..10856308 192..8 925 100 Minus
2R 25286936 2R 10848487..10848534 916..868 195 98 Minus
Blast to na_te.dros performed on 2014-11-27 20:54:12 has no hits.

FMO11007.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:04 Download gff for FMO11007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30015-RC 979..1891 1..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:10 Download gff for FMO11007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30015-RF 168..1078 1..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:14 Download gff for FMO11007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30015-RF 168..1078 1..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:14 Download gff for FMO11007.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10848487..10848540 861..916 96 <- Minus
2R 10848594..10849260 193..860 99 <- Minus
2R 10856124..10856311 1..192 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:10 Download gff for FMO11007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6735992..6736045 861..916 96 <- Minus
arm_2R 6736099..6736765 193..860 99 <- Minus
arm_2R 6743629..6743816 1..192 97   Minus