Clone FMO11008 Report

Search the DGRC for FMO11008

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34408-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11008.5prime Sequence

1127 bp (1021 high quality bases) assembled on 2011-11-18

> FMO11008.5prime
CAGTCGACATGTACTCCGAGTGGGCCTCGCTGTCTGCCCAAATCACAGCC
AACAGCTGCGGCGCCCAGTGCTTCAGTGTGCTCAACAAATTCCCCGCCTC
CGCCGGACGCGAAGTGGTCGTCTCCGTGGTCAAGCAGCTGGGCACCAATC
TGGGCATCACGCAGAATGCAGAGCCCAGTCACCTGGTCAAAGACGAAGAG
GTAAAATGGTGCATGGACGTGATCTGCTTCGGACTTTCGCTTCCTCTGCA
GGAACACGAGACGATCAAGGATTGCGTGAATGTGTACTGCGAGTGGCTGA
CGGCGCTGCATCCGCAGCCCAGGATCAGTGTACCGAAGCCGATATGCGAG
GATGCCAATCTCTATGCTCGCCAGATCATCAATCACTTTCACAATCTGTT
TGTGCCGCGCCAGGGCGAAAGTGCAGATACAATTAAACGGCAGGCAGTGC
TCTGCCATCGGGTGCTACGAACTCTGCAGCAAACTGCTCAGATATCGCAG
CTAATGGATCGGCAGACGTGGGACACGCTGCTTCTCTTTCTGCTGGCTAT
CAATGAGATCCTGCTGGCGCCGCCCACCGTCAAGGACGATGTGGGCGATC
AGCTGTGCGAGCGTGTGCTATCCGTGCTCTTCGAGGTCTGGCTTCTGGCC
TGCGTTCGCAGTTTTCCCTCACCGTCGATGTGGAAGACGCTGCAGGAGTC
GTGTGCCATGTGGCGACACCGTGTAGCCCTCGTGGATCAATGGAATCGAG
TGAACTTGGCACTAACCGCTCGCCTGCTGGAGTTCAGCTATGGTCCTGCG
TTTCCACAGCTCAAGAATGCCGACGAGGATGGCCAGCTGATACCAATTGG
AATGTCCAACGACTGTGTGGCCCAGACTTGGTACCGCTTCCTGCGTATGA
TTGGCAATCCCACGGCGCTCTGTTCACACATATCATCAGCAAATCATCAC
ACTTTGTTCAGTGGGGCGTTGACCCATGGAAAGGGCGCCGGAGACGCATC
AGCATCCCTGCCTTGCACAACTTGCCACAGATTTTTCTTCAATTTCAATG
AAGGGAATTTCCAGTCAGGTGACCGCTTTTCTAAGCTTGAACAAGACCTC
GCTTATTTGGCCTCACGCGGTGGTCAG

FMO11008.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG34408-RA 5236 CG34408-RA 440..1552 9..1124 5170 98 Plus
CG34408-RD 5044 CG34408-RD 440..1552 9..1124 5170 98 Plus
CG34408-RI 5044 CG34408-RI 440..1510 9..1083 5050 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10221866..10222264 421..819 1995 100 Plus
X 23542271 X 10221361..10221584 199..422 1120 100 Plus
X 23542271 X 10220549..10220742 9..202 970 100 Plus
X 23542271 X 10222325..10222585 819..1083 855 92.5 Plus
Blast to na_te.dros performed on 2014-11-27 20:54:21 has no hits.

FMO11008.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:05 Download gff for FMO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34408-RA 436..1550 1..1127 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:14 Download gff for FMO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34408-RD 436..1550 1..1127 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:17 Download gff for FMO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34408-RD 436..1550 1..1127 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:17 Download gff for FMO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10222326..10222586 820..1084 93 -> Plus
X 10220545..10220740 1..200 98 -> Plus
X 10221363..10221582 201..420 100 -> Plus
X 10221866..10222264 421..819 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:14 Download gff for FMO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10116359..10116619 820..1084 93 -> Plus
arm_X 10114578..10114773 1..200 98 -> Plus
arm_X 10115396..10115615 201..420 100 -> Plus
arm_X 10115899..10116297 421..819 100 -> Plus