FMO11008.5prime Sequence
1127 bp (1021 high quality bases) assembled on 2011-11-18
> FMO11008.5prime
CAGTCGACATGTACTCCGAGTGGGCCTCGCTGTCTGCCCAAATCACAGCC
AACAGCTGCGGCGCCCAGTGCTTCAGTGTGCTCAACAAATTCCCCGCCTC
CGCCGGACGCGAAGTGGTCGTCTCCGTGGTCAAGCAGCTGGGCACCAATC
TGGGCATCACGCAGAATGCAGAGCCCAGTCACCTGGTCAAAGACGAAGAG
GTAAAATGGTGCATGGACGTGATCTGCTTCGGACTTTCGCTTCCTCTGCA
GGAACACGAGACGATCAAGGATTGCGTGAATGTGTACTGCGAGTGGCTGA
CGGCGCTGCATCCGCAGCCCAGGATCAGTGTACCGAAGCCGATATGCGAG
GATGCCAATCTCTATGCTCGCCAGATCATCAATCACTTTCACAATCTGTT
TGTGCCGCGCCAGGGCGAAAGTGCAGATACAATTAAACGGCAGGCAGTGC
TCTGCCATCGGGTGCTACGAACTCTGCAGCAAACTGCTCAGATATCGCAG
CTAATGGATCGGCAGACGTGGGACACGCTGCTTCTCTTTCTGCTGGCTAT
CAATGAGATCCTGCTGGCGCCGCCCACCGTCAAGGACGATGTGGGCGATC
AGCTGTGCGAGCGTGTGCTATCCGTGCTCTTCGAGGTCTGGCTTCTGGCC
TGCGTTCGCAGTTTTCCCTCACCGTCGATGTGGAAGACGCTGCAGGAGTC
GTGTGCCATGTGGCGACACCGTGTAGCCCTCGTGGATCAATGGAATCGAG
TGAACTTGGCACTAACCGCTCGCCTGCTGGAGTTCAGCTATGGTCCTGCG
TTTCCACAGCTCAAGAATGCCGACGAGGATGGCCAGCTGATACCAATTGG
AATGTCCAACGACTGTGTGGCCCAGACTTGGTACCGCTTCCTGCGTATGA
TTGGCAATCCCACGGCGCTCTGTTCACACATATCATCAGCAAATCATCAC
ACTTTGTTCAGTGGGGCGTTGACCCATGGAAAGGGCGCCGGAGACGCATC
AGCATCCCTGCCTTGCACAACTTGCCACAGATTTTTCTTCAATTTCAATG
AAGGGAATTTCCAGTCAGGTGACCGCTTTTCTAAGCTTGAACAAGACCTC
GCTTATTTGGCCTCACGCGGTGGTCAG
FMO11008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34408-RA | 5236 | CG34408-RA | 440..1552 | 9..1124 | 5170 | 98 | Plus |
CG34408-RD | 5044 | CG34408-RD | 440..1552 | 9..1124 | 5170 | 98 | Plus |
CG34408-RI | 5044 | CG34408-RI | 440..1510 | 9..1083 | 5050 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10221866..10222264 | 421..819 | 1995 | 100 | Plus |
X | 23542271 | X | 10221361..10221584 | 199..422 | 1120 | 100 | Plus |
X | 23542271 | X | 10220549..10220742 | 9..202 | 970 | 100 | Plus |
X | 23542271 | X | 10222325..10222585 | 819..1083 | 855 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:54:21 has no hits.
FMO11008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:05 Download gff for
FMO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34408-RA | 436..1550 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:14 Download gff for
FMO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34408-RD | 436..1550 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:17 Download gff for
FMO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34408-RD | 436..1550 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:17 Download gff for
FMO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10222326..10222586 | 820..1084 | 93 | -> | Plus |
X | 10220545..10220740 | 1..200 | 98 | -> | Plus |
X | 10221363..10221582 | 201..420 | 100 | -> | Plus |
X | 10221866..10222264 | 421..819 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:14 Download gff for
FMO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10116359..10116619 | 820..1084 | 93 | -> | Plus |
arm_X | 10114578..10114773 | 1..200 | 98 | -> | Plus |
arm_X | 10115396..10115615 | 201..420 | 100 | -> | Plus |
arm_X | 10115899..10116297 | 421..819 | 100 | -> | Plus |