FMO11009.5prime Sequence
1120 bp (1016 high quality bases) assembled on 2011-11-18
> FMO11009.5prime
CAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGGCGGGCTTC
TCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTCCTGCCCCA
GGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAATTGTTAAGC
TGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGGAAAACATC
AATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCCTTCTTGGA
TGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGGTATTGCGG
ATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCCAGTGCAGT
CACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTCCACTTCGC
TAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGCTCAGCTGG
GTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATGTTCATCGT
TCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAGTTGGATAA
GGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTCGTATCACT
TCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCGCCAAGGCG
GCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAGCTGGAGGA
TCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCACGCTATCATTGATG
CCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATCTGATGAAC
ATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTACCGAAAGAA
ACTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACCCAATCTGC
AGTCTTTGATTGGCGACCAGGTCGGTGCCCGCCTGATATCGCATGCCGGC
AGCTTGACTAATCTGGCCAAGTACCCAGCATCTACAGTACAAATCCTGGG
TGCGAGAAGCGCTCTTCGTGCCTCTGAAGACCCGCTCATACGCCCAAGTT
ATGGTCTTAACTTTCCACTCCTCGTCATTGTTCGAGCTGACTGAAGAAAC
AGTCGATCTCTTCGATTCCT
FMO11009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..1230 | 6..1120 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419645..22420323 | 1089..414 | 2955 | 97.7 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 415..11 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:29 has no hits.
FMO11009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:05 Download gff for
FMO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1208 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:18 Download gff for
FMO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1208 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:21 Download gff for
FMO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1208 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:21 Download gff for
FMO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419724..22420322 | 415..1011 | 99 | <- | Minus |
| 3R | 22420388..22420796 | 1..414 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:18 Download gff for
FMO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18245446..18246044 | 415..1011 | 99 | <- | Minus |
| arm_3R | 18246110..18246518 | 1..414 | 98 | | Minus |
