FMO11010.5prime Sequence
1117 bp (1024 high quality bases) assembled on 2011-11-18
> FMO11010.5prime
CAGTCGACATGATGAGTCTAAGGATTTGCCTGCTGGCCACCTGCCTCCTG
GTGGCGGCCCATGCCTCCAAGGATGCCTCCAATGACCGACTGAAGCCGAC
CAAGTGGCTGACCGCCACCGAGCTGGAGAACGTGCCCTCCCTCAACGACA
TCACCTGGGAGCGTTTGGAGAATCAGCCGCTGGAGCAGGGCGCCAAGGTG
ATCGAGAAGATCTACCACGTTGGCCAAATCAAGCACGATCTGACCCCCAG
CTTTGTGCCCAGCCCGAGCAATGTGCCCGTCTGGATTATCAAGTCCAATG
GACAGAAGGTTGAGTGCAAGTTGAACAACTATGTGGAGACGGCCAAGGCA
CAGCCCGGATTCGGCGAGGATGAGGTCACCATTGTCCTGACTGGTCTGCC
CAAGACCAGCCCCGCTCAGCAGAAGGCCATGCGCAGGTTGATCCAGGCCT
ACGTCCAGAAGTACAACCTCCAGCAGCTGCAGAAGAACGCCCAGGAGCAG
CAGCAGCAGCTCAAGAGCAGCGACTACGACTACACCAGCAGCGAGGAGGC
CGCTGACCAATGGAAATCCGCCAAGGCTGCCAGCGGCGATTTGATCATCA
TTGACCTCGGCTCCACCCTGACCAACTTCAAACGCTACGCGATGCTGGAT
GTTCTGAACACCGGCGCCATGATCGGCCAGACCCTGATCGATCTGACCAA
CAAGGGTGTGCCCCAGGAGATCATCCATCTGATCGGCCAGGGAATCAGCG
CCCATGTGGCCGGAGCTGCTGGCAACAAGTACACCGCCCAAACCGGACAC
AAGCTGCGCCGCATCACCGGTCTGGATCCCGCCAAGGTGCTGTCCAAGCG
TCCCCAGATCCTGGGTGGTCTGTCCCGCGGCGATGCTGACTTCGTTGATG
CCATTCACACATCGACCTTCGGCCATGGCACGCCCATCCGTTGCGGCGAT
GTGACTTCTACCCAACGGACCGTCCACCGGTGTTCCCGGCTTCGAGAATG
TGATCGAGGCTGGTGCCGTGCCACCGTACTTGCGAGTCTGTGCGTCCGGG
TAGCGAGCGCAATTCCCCGCCGTCGGCCAACTCACTTGAATGCAAGTCAA
GGAGCAGGATGCTGGCA
FMO11010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yp3-RB | 1868 | CG11129-RB | 57..1167 | 9..1111 | 5110 | 98.1 | Plus |
| Yp3-RA | 1488 | CG11129-RA | 57..1167 | 9..1111 | 5110 | 98.1 | Plus |
| Yp1-RB | 1611 | CG2985-RB | 920..1119 | 792..989 | 365 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13760324..13760802 | 597..1068 | 1950 | 96.2 | Plus |
| X | 23542271 | X | 13759869..13760251 | 214..596 | 1915 | 100 | Plus |
| X | 23542271 | X | 13759602..13759806 | 9..213 | 1025 | 100 | Plus |
| X | 23542271 | X | 10054807..10055006 | 792..989 | 315 | 79.5 | Plus |
| X | 23542271 | X | 10051568..10051783 | 923..708 | 225 | 73.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:22 has no hits.
FMO11010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:00 Download gff for
FMO11010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 51..1170 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:46 Download gff for
FMO11010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 51..1170 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:56 Download gff for
FMO11010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 50..1169 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:56 Download gff for
FMO11010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13759595..13759806 | 1..213 | 98 | -> | Plus |
| X | 13759869..13760251 | 214..596 | 100 | -> | Plus |
| X | 13760324..13760848 | 597..1116 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:46 Download gff for
FMO11010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13653628..13653839 | 1..213 | 98 | -> | Plus |
| arm_X | 13653902..13654284 | 214..596 | 100 | -> | Plus |
| arm_X | 13654357..13654881 | 597..1116 | 95 | | Plus |
