FMO11011.5prime Sequence
389 bp (-60 high quality bases) assembled on 2011-11-18
> FMO11011.5prime
CTCCTCCGCAGTTCACCTATGTGCCGCCCCCCTCGGCCCCGCCCTCTTAC
CAGGAGGCGGTGGGCGGAGTGAAGCCGGTGGGTCCATATACGCCCGTGGT
GGCGCCCGCAACCACGGCAAATACCACGATTGTGACCACGGTTGTGCCCA
TTAGCCGCACTTCGACGCACATGATCTGTCCATCGTGCCATGCCGAGATC
GAGACGACTACGCGCACCGAGCCGGGAATGATTGCCTACTTGTCCGGATT
TTTGATTGCCCTATTTGGTTGCTGGCTGGGATGCTGCCTAATACCTTGCT
GCATCGACGACTGCATGGATGTGCATCACTCGTGCCCCAACTGCCGCGCA
TATTTGGGGCGATACCGTCGAGCAAGCTTTCTAGACCAT
FMO11011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32280-RD | 1279 | CG32280-RD | 266..636 | 1..371 | 1840 | 99.7 | Plus |
| CG32280-RC | 1440 | CG32280-RC | 427..797 | 1..371 | 1840 | 99.7 | Plus |
| CG32280-RB | 1144 | CG32280-RB | 131..501 | 1..371 | 1840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3167998..3168265 | 1..268 | 1325 | 99.6 | Plus |
| 3L | 28110227 | 3L | 3168334..3168437 | 268..371 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc4-element | 2791 | Doc4-element DOC4 2791bp | 2582..2683 | 343..240 | 118 | 61 | Minus |
FMO11011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:01 Download gff for
FMO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RC | 427..804 | 1..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:50 Download gff for
FMO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RA | 98..475 | 1..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:59 Download gff for
FMO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RB | 131..508 | 1..379 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:59 Download gff for
FMO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3167998..3168265 | 1..268 | 99 | -> | Plus |
| 3L | 3168335..3168444 | 269..379 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:50 Download gff for
FMO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3167998..3168265 | 1..268 | 99 | -> | Plus |
| arm_3L | 3168335..3168444 | 269..379 | 96 | | Plus |
