FMO11013.5prime Sequence
950 bp (950 high quality bases) assembled on 2011-11-18
> FMO11013.5prime
CAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTGCCAGCGAG
CTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCACATCCTTTC
GCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTCGGGCACCT
CCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCACTGCCATT
GCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTCGTCCCGTT
GGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGGCAGCAGTC
CGGATAGTGATGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTG
GACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTC
GTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCTAGGGAC
TGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAG
GGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGA
GGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGT
GCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTG
CCGTGCAAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAA
TATTTTCTCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCGCA
GTGGCCGTGACTCACGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTAGA
GGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAGCA
AAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAAGACC
CGTGAGGAATTCCTGAACTTAGTCAATAGCAAGCAAGCTTTCTAGACCAT
FMO11013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RC | 1744 | CG9441-RC | 174..1097 | 8..932 | 4555 | 99.6 | Plus |
| Pu-RA | 1793 | CG9441-RA | 527..1146 | 312..932 | 3035 | 99.4 | Plus |
| Pu-RB | 1625 | CG9441-RB | 359..978 | 312..932 | 3035 | 99.4 | Plus |
| Pu-RA | 1793 | CG9441-RA | 175..480 | 8..313 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21179292..21179597 | 8..313 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 21179937..21180147 | 312..522 | 1040 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21181419..21181585 | 522..689 | 790 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21181836..21181961 | 807..932 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 21181644..21181761 | 689..806 | 560 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:05 has no hits.
FMO11013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:08 Download gff for
FMO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RC | 168..1097 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:37 Download gff for
FMO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RC | 168..1097 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:34 Download gff for
FMO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RC | 168..1097 | 1..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:34 Download gff for
FMO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21179286..21179596 | 1..312 | 99 | -> | Plus |
| 2R | 21179938..21180147 | 313..522 | 99 | -> | Plus |
| 2R | 21181420..21181585 | 523..689 | 99 | -> | Plus |
| 2R | 21181645..21181761 | 690..806 | 98 | -> | Plus |
| 2R | 21181836..21181961 | 807..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:37 Download gff for
FMO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17066791..17067101 | 1..312 | 99 | -> | Plus |
| arm_2R | 17067443..17067652 | 313..522 | 99 | -> | Plus |
| arm_2R | 17068925..17069090 | 523..689 | 99 | -> | Plus |
| arm_2R | 17069150..17069266 | 690..806 | 98 | -> | Plus |
| arm_2R | 17069341..17069466 | 807..932 | 100 | | Plus |
