FMO11014.5prime Sequence
1051 bp (1035 high quality bases) assembled on 2011-11-18
> FMO11014.5prime
CAGTCGACATGGTCAAAGAGGTTAATATGTCGGGGACGCAAATGTCTGCC
TTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGCGCAATT
CAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACGAAAAAA
CGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGACGAGGTA
AAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGCTTGGAA
TTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTTTTGTGA
ACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTGCGCAGA
AAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAGAGAAAT
AGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATAGATGGC
AAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCAGACGCT
CATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGCAAACAC
AAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGATGGCTC
CGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGATGAGGAC
GAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCCAGAGAC
AGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTTAAGAAGGA
TGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCCGGAATACG
GAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGCACATTAGT
ACGACCCACGTCGACTCAAGAGCCTGACGATCAGTAAACTGTCCAGAGAC
AGAGATGAATGAGAGCTGGGTAAGTGTGATCAAATTAATTCGGAAAGCTT
GTCGATTGGACCGTCAATTGATTCGGAAGGAACTATCACTTTTCAAATAC
AGAATCTGGAGCCGATCGACGTCACTCATAGCCGCAGCCTGTCTAGACCA
T
FMO11014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1776 | CG6219-RE | 640..1658 | 9..1025 | 4985 | 99.5 | Plus |
| cav-RB | 1226 | CG6219-RB | 96..1108 | 15..1025 | 4940 | 99.4 | Plus |
| cav-RA | 1520 | CG6219-RA | 396..1402 | 21..1025 | 4925 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223410 | 152..1025 | 4170 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24222337..24222474 | 15..152 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:12 has no hits.
FMO11014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:08 Download gff for
FMO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 594..1629 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:40 Download gff for
FMO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 633..1668 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:37 Download gff for
FMO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 633..1668 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:37 Download gff for
FMO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24222536..24223420 | 153..1033 | 99 | | Plus |
| 3R | 24222337..24222474 | 15..152 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:40 Download gff for
FMO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20048258..20049142 | 153..1033 | 99 | | Plus |
| arm_3R | 20048059..20048196 | 15..152 | 99 | -> | Plus |
