FMO11015.5prime Sequence
1087 bp (776 high quality bases) assembled on 2011-11-18
> FMO11015.5prime
CAGTCGACATGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCAC
TTACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAG
TAATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGT
GTCGAAAGGCAAAAAGAGAACTCTTACCCGTTTTAATAGTTACTTCGTAT
GCCGGACACGATGCCTTGCGATCATCTCACCGACAGGCAATTCCCCAAAG
CAAACTGGAATAAATGGGCCTGCAAAGAGTTTTTCTCTTGGCAGCCCTGC
CTTCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAAT
CGTTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCT
GAGCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAA
AGCAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTG
TTTCATCTGCGCAGGTATTTAAAGACCCTCAAGGTGCGCGAACCTGGACT
GGCCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCC
CCATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCT
CAGGCTTTATATCCCGCCTATTTTGTCGGGCTGGCTTTACGTGACCAACG
TGCCAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTT
TGGATCGATGACACCTGGTTGACTGGAGTAGTAAGGACTCGTTTGGGTAT
TCCCCTTGAGCGTCACAACGACTGGGTTTTCTGCCATGCAAAGTTCATCG
ACTGCTGTGTGCGAGATCTCAGAAGCACAACTATGAGTGCGAGTACTCCG
TGGGACCCGATGTCGGTGACGACCGATACTGGTGGAATTTTCTGCATAAC
GTTGAAAAGTGCTACTTTGATGAATGCGTCAAACGGCGATTGTTAGTTCG
CTCAAGAAAACCTGTTTAGCGGCGGCCAAATTCTCGACCCCTTAACATGG
ATTTTCTGAAATAAACGTTGCGACTCAGGCAAGCTTT
FMO11015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-RB | 1630 | CG3038-RB | 176..1249 | 9..1079 | 4825 | 97.1 | Plus |
| CG3038-RA | 1731 | CG3038-RA | 279..1350 | 11..1079 | 4815 | 97.1 | Plus |
| CG3038-RC | 1751 | CG3038-RC | 696..1263 | 515..1079 | 2355 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 244442..245350 | 1079..174 | 3760 | 95.7 | Minus |
| X | 23542271 | X | 245413..245578 | 176..11 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:19 has no hits.
FMO11015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:09 Download gff for
FMO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 154..1235 | 1..1079 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:45 Download gff for
FMO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 168..1249 | 1..1079 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:41 Download gff for
FMO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 168..1249 | 1..1079 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:41 Download gff for
FMO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 245412..245578 | 11..177 | 99 | | Minus |
| X | 244442..245346 | 178..1079 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:45 Download gff for
FMO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 139445..139611 | 11..177 | 99 | | Minus |
| arm_X | 138475..139379 | 178..1079 | 96 | <- | Minus |
