Clone FMO11017 Report

Search the DGRC for FMO11017

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11381-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11017.5prime Sequence

1115 bp (1027 high quality bases) assembled on 2011-11-18

> FMO11017.5prime
CAGTCGACATGCTCAAAGCCGCAAAGATCCCCTTGTTCTTCGCCCTTTTG
GGTGCTGTGTGTATCCAGGCCGTCGTGGTTGGTCCCCAGCCATTGCATAA
TAACAACAGGAACGGCTACCGCTACAATGGCCCCGCCCACAAGTATCTCC
CATCGGAGGAGTCGCACTCGCACGGCAGCCCCTTGGATTCGAGTCACCAG
CATGATCAGCAGGGCCCCAGTAATGCCTACAACTCACATCATTACCCAGC
ACAGGAGCAACATGGCCAGGGAGCGCCGGAGCACGACCATCAGCAGAAGG
AGGTTGACTCCTGGCAAACGGCTCTTTCCCAGCAGCAACACGAGAGCTTC
GGAAACCAGCAAAATCATCAGAACGCCTACAATGAAGGACCTGTGTACCA
GCACTATCAGGGATTTAACCACCAACAACATTATGGATTAAGCCAACAGC
AACAGCATGAAAGCTACGGGCAGGAACACTATCAACAGAGCCCCAACCAG
CTGCAACACCATCAGTCCCAACACGCAAACGAATATGCCTACGAACCAGC
TCATTTCCAGCAGCAACAGCAGCATCACGAAATTCAGGGTCACAAGCAGC
ATCAGCAGAGGAAAGAGCACTGGAACTTCGTTCAAGAGCAGCAACCCCAA
AATCACGAACCCTGGCAATCTTCGCATGGCTTCCAACAGCACCAGCAGCA
GCATTCCAATCGCTTTGAGTCACAGCTTCCGCTGCGGGAAGACCTTTGGC
AACCCATTCGTGAGCTGGACCTAGAGAAGCTTCCTTCGGCTGAGGCGCAC
GCCAGTAGCCACAAGACAGTTGCAGCTCCTGGACGAGATGTAAAGCTCGT
GCCCAGTTACACGCTCTCCAGCGACTTTGAGCACGACCGCTTCATCGGAC
TGGATAGTACGGACACTCGTCTGCTGACCCAATCTCTGCCAGATGCCTAC
CGGAAACAGCTGTCTCTCGCCACAGAACCATCGTCTTTAGCCCAGGGACA
TAACAGCAACACAGCCCGGATCCGCAGCTATGTGTCCCACGACCATCCTT
GGCGATCCCATCCGATTTCTTGCAATGCAGTCCCACTCGGATTAGCTGCG
TCAACGGTTTAATCA

FMO11017.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11381-RA 1603 CG11381-RA 86..1190 9..1099 5140 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1203932..1204940 25..1028 4800 99.3 Plus
Blast to na_te.dros performed 2014-11-27 20:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6920 437..645 234 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7002 418..703 212 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6964 475..721 212 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2464 558..703 202 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6861 555..703 199 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2544 444..654 198 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6918 496..703 198 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2514 496..702 196 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2616 483..783 193 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2687 418..734 193 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2372..2510 470..608 190 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..7012 330..581 182 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..7013 397..660 181 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2608 507..813 180 54.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6944 397..603 179 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 449..619 172 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6951 355..577 168 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2647..2945 418..710 167 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6897 558..703 167 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6646..6880 475..704 165 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2440 563..703 142 58.2 Plus
roo 9092 roo DM_ROO 9092bp 1006..1150 445..581 139 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1373..1600 402..620 136 55 Plus
roo 9092 roo DM_ROO 9092bp 1059..1161 545..655 130 64.3 Plus

FMO11017.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:10 Download gff for FMO11017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11381-RA 76..1200 1..1111 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:55 Download gff for FMO11017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11381-RA 78..1202 1..1111 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:48 Download gff for FMO11017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11381-RA 78..1202 1..1111 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:48 Download gff for FMO11017.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1203934..1205032 27..1111 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:55 Download gff for FMO11017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1097967..1099065 27..1111 98   Plus