FMO11018.5prime Sequence
1118 bp (1004 high quality bases) assembled on 2011-11-18
> FMO11018.5prime
CAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCCCCATCGGG
GGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAATCAATCGG
CGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGAGTATGGTC
GAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTCAAAATCCC
AAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCCGATTCCAA
AGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGTACTCCTGC
CCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCACAAAGGAT
GAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAGTCTGGCGT
GGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGCGGAGGAGC
TCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACGAGTTCATT
TCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATCCGCTACGT
CATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGTTTTATTTG
CAGTTTTATCAAGCTCCATTGTGGCTTGTTTACCTTTTCGATTTGTACGG
CTTTCTCTAGCGAGCTTGTCATTCAAAATTACGTTCCGCCTTATTTCAAG
TTCTATGTCCTCCTTTATCAAGTTCCACAATAAGCAATATAAGCCCACAG
TCTCTGGGTTCTGTGTAGCCAACCACACCTCTCCCTTGGATGTGGCTATA
TTATCGACCGATTGTACCTACTCTTTGATTGGCCAACGCCATGGCGGCTT
TTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACATTTGGG
TTTGAGCGCGGCGAGGCCAAGATCGTCATTTGGTGGCCGAGCGAATTGAA
GCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTCCCGGAGG
ACTTGGCATCAACAACAACGTCGGTCATGCAGTCAAGAAAGGCCAGCTTC
GAAGGTGGCGGCGTCATCTTACCGGGTGGCATTAGTACGGATCGAGTCGC
CACGCCTCTGAAACGCCG
FMO11018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RC | 1751 | CG3209-RC | 151..1231 | 9..1089 | 5085 | 98.5 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..969 | 9..827 | 4095 | 100 | Plus |
| CG3209-RB | 1660 | CG3209-RB | 151..734 | 9..592 | 2920 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 1192..1465 | 816..1089 | 1020 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24069998..24070244 | 346..592 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 24070768..24071004 | 591..827 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 142..348 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24072704..24072945 | 827..1069 | 825 | 93.9 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:47 has no hits.
FMO11018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:11 Download gff for
FMO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 286..1374 | 3..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:59 Download gff for
FMO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 146..1234 | 3..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:53 Download gff for
FMO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 146..1234 | 3..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:53 Download gff for
FMO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24072705..24072960 | 828..1084 | 94 | | Plus |
| 2R | 24070768..24071004 | 591..827 | 100 | -> | Plus |
| 2R | 24069195..24069334 | 3..143 | 97 | -> | Plus |
| 2R | 24069739..24069942 | 144..347 | 100 | -> | Plus |
| 2R | 24070000..24070242 | 348..590 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:59 Download gff for
FMO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19956718..19956857 | 3..143 | 97 | -> | Plus |
| arm_2R | 19957262..19957465 | 144..347 | 100 | -> | Plus |
| arm_2R | 19957523..19957765 | 348..590 | 100 | -> | Plus |
| arm_2R | 19958291..19958527 | 591..827 | 100 | -> | Plus |
| arm_2R | 19960228..19960483 | 828..1084 | 94 | | Plus |
