FMO11019.5prime Sequence
1051 bp (1013 high quality bases) assembled on 2011-11-18
> FMO11019.5prime
CAGTCGACATGGATTTCAATTTTGATACTGTGACTCCCTGTTCGACCATG
TCGTCCTACTATAACTTTAAGATGGCGAGTGGTGGGCGTGGATTTGGGAT
GTCCCATTCTCTGCCATCCGGAATGGATACAGAATTTTCATTTCCAAGTT
CATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCTGCGGCGGCAGCGGC
GGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGCAACATGTGCCACCT
GCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGC
TGGGCAGCGGTGGTAGTGATGATCTCATGAACGATCCTCGGGCAAGCAAC
ACCAACCTGATTGTCAACTACTTGCCCCAGGACATGACCGATCGCGAGCT
GTACGCCCTATTCAGAGCCATTGGACCCATCAACACGTGCAGAATCATGC
GAGACTATAAGACTGGCTACAGTTTTGGTTATGCTTTCGTGGACTTCACA
TCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTGAATGGCATCACAGT
GCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCCCGGCGGAGAATCGA
TCAAGGACACCAATCTGTATGTGACCAATCTGCCGCGTACCATAACCGAC
GATCAGCTGGACACGATCTTCGGCAAGTACGGTTCCATTGTGCAGAAGAA
CATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGGTGTGGCCTTTGTTC
GGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAAC
GTAATACCCGAGGGCGGATCACAGCCGCTGTCCGTCCGGTTGGCTGAGAG
CATGGCAAGGCGAAGCGCCCACTTTATGTCGCAGATGGGCGTGTTTCAGC
AAATGTACCACCGCCGCCACCACAACCGCCAGCACATATGGCCGCCGCAT
TCAACATGATGCACAGAGTAGATCATTAAATCACAGCACGCTTCAAAACT
CGCATCCTATTTTCGAATGCAAAAGTTTATCGCAAGCTTTCTAGAACCAT
T
FMO11019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RC | 1515 | CG43770-RC | 117..1148 | 9..1031 | 4840 | 98.6 | Plus |
| Sxl-RN | 2758 | CG43770-RN | 117..1148 | 9..1031 | 4840 | 98.6 | Plus |
| Sxl-RR | 3738 | CG43770-RR | 117..1080 | 9..968 | 4705 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085955 | 461..125 | 1685 | 100 | Minus |
| X | 23542271 | X | 7084556..7084820 | 1007..751 | 930 | 96.2 | Minus |
| X | 23542271 | X | 7085156..7085341 | 753..568 | 930 | 100 | Minus |
| X | 23542271 | X | 7085408..7085519 | 571..460 | 560 | 100 | Minus |
| X | 23542271 | X | 7092697..7092767 | 79..9 | 355 | 100 | Minus |
| X | 23542271 | X | 7087613..7087661 | 126..78 | 245 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 350..456 | 205 | 79.4 | Plus |
Blast to na_te.dros performed 2014-11-27 20:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 216..177 | 110 | 75 | Minus |
FMO11019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:11 Download gff for
FMO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RC | 111..1142 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:03 Download gff for
FMO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RN | 117..1148 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:55 Download gff for
FMO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RN | 117..1148 | 9..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:55 Download gff for
FMO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7085619..7085954 | 126..461 | 100 | <- | Minus |
| X | 7087614..7087659 | 80..125 | 100 | <- | Minus |
| X | 7092697..7092767 | 9..79 | 100 | | Minus |
| X | 7084531..7084819 | 752..1031 | 95 | <- | Minus |
| X | 7085158..7085339 | 570..751 | 100 | <- | Minus |
| X | 7085410..7085517 | 462..569 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:03 Download gff for
FMO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6978564..6978852 | 752..1031 | 95 | <- | Minus |
| arm_X | 6979191..6979372 | 570..751 | 100 | <- | Minus |
| arm_X | 6979443..6979550 | 462..569 | 100 | <- | Minus |
| arm_X | 6979652..6979987 | 126..461 | 100 | <- | Minus |
| arm_X | 6981647..6981692 | 80..125 | 100 | <- | Minus |
| arm_X | 6986730..6986800 | 9..79 | 100 | | Minus |
