Clone FMO11021 Report

Search the DGRC for FMO11021

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOsi19-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11021.5prime Sequence

797 bp (797 high quality bases) assembled on 2011-11-18

> FMO11021.5prime
CAGTCGACATGGCCAAGTTGCTCCTTGTGATCGTTGGTGTGGCGGCCCTA
GTGGCAGCGGGACAGGCGGCCGGTGGCTCCACCGAAAAGATGCAGAGGCT
TATCGCCGAGGAGCAAAACAAGTGCGCCAGTGGCCAAGACTCGATGGCCT
GCATCAAAGAGCGGGCCATGCGGTTTGTGGACAACGTGATGAGCAAAGAC
AGCTTCCAGGTTTCCAACCTGGAAGTCCGCTCCAATGGAGAGAAGACCAC
GCCTATCAACGAAGCTCGTGCCAGCAGTGCCGACGGATTTCTGGACGCCA
TTGAGAACTATATCCGTGGACACGACGTGAGCATGGACTTGCCCTTGGCC
GATGCCAAGGTCACCGTCTCGGCCCGCAACCTGGTTAACAATCAGCTGAG
CCTGAACCTCCAGCTGAACGGCGACGATGGCGATGAGGGCACCGATGTCG
AAGCCAGGGGCAAGAAACACCGTCTCCGCAAGCTGGCCATGCCCATCCTG
GTGCTCATCCTGCTGAAGGCCATCACAGTGATCCCCATGGCCATTGGCAT
CCTGAAGATCAAGGCCTTCAACGCCCTGGCCCTGGGCTTCTTCTCCTTCA
TTGTCTCGGTTGGTTTGGCCATTTTCCAATTGTGCAAAAAGATTGCTCAT
GATCACCATCACACCGCCCACATCACCGCCCATGGTCCTTGGGACGGCCG
CACCTTTAGCTCCGTTCCTGCCCCCGTTGTCGAGCAGCCCCAGAAGTTGG
GGCAAGCCCTGGCTTACCAGGCCTACGCTGCAAGCTTTCTAGACCAT

FMO11021.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Osi19-RB 1111 CG15189-RB 82..852 9..779 3855 100 Plus
Osi19-RA 1138 CG15189-RA 82..539 9..466 2275 99.8 Plus
Osi19-RA 1138 CG15189-RA 558..879 458..779 1610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6335920..6336178 208..466 1280 99.6 Plus
3R 32079331 3R 6335443..6335645 9..211 1015 100 Plus
3R 32079331 3R 6336279..6336461 459..641 915 100 Plus
3R 32079331 3R 6336798..6336937 640..779 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:56:09 has no hits.

FMO11021.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:13 Download gff for FMO11021.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi19-RB 73..850 1..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:11 Download gff for FMO11021.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi19-RB 75..852 1..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:03 Download gff for FMO11021.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi19-RB 75..852 1..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:03 Download gff for FMO11021.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6335922..6336171 210..459 100 -> Plus
3R 6336280..6336461 460..641 100 -> Plus
3R 6336800..6336937 642..779 100   Plus
3R 6335436..6335643 1..209 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:11 Download gff for FMO11021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2161158..2161365 1..209 98 -> Plus
arm_3R 2161644..2161893 210..459 100 -> Plus
arm_3R 2162002..2162183 460..641 100 -> Plus
arm_3R 2162522..2162659 642..779 100   Plus