FMO11022.5prime Sequence
1155 bp (1036 high quality bases) assembled on 2011-11-18
> FMO11022.5prime
CAGTCGACATGTGGCAGACACTATCAACTTTTAGCACATCACTCAGAGCA
GCAGCAGCAGCAGTGGCAGCACAACCAGCAGCAACTTGCAACTGTAGCTG
CAAGCTGGAAAACGCGGAAATGCACAGTCACATGTTGCCATCAGCAGAGA
TTGCGACAACGGCAGTGCGTAGGTGTTGCTGTCGCACAAAAATCACCCGC
AGCAACAGCAGCAACTATAGTTGCAACTACGGCAGCAACGTGATCCAGTG
GCTACTGCTACTGTGCCTTTTCTGTGATTTTGGCCAGGCCGCGCTGCGTG
ACGTAAATCTGCTGGTGGAGCCTCCGGCGGTGCGAAGGGGTCAGTCTGTG
GCCCTGCGGTGCGATTACCAATTGGTGGAGGCGCCCCTGTATTCCATTAA
GTTTTACCGCGGCCAGATGGAATTCTACCGCTACACACCAGGCGAGTATC
CGCCAACCAAGGTCTTTCAGTTCCCCGGCATCAGAGTGGACGAGAACGGC
TCGAATGCCACCACCGTGCTCATCCGCAACGTTAGCTTCGGCCTGTCCGG
ACAATTCAGCTGCGAGGTTACGGCGGATGCCCCGCTCTATTCCACGGCCA
CAGCCTTCGCCCAGATGCAAGTTGTGGAATTTCCGGAGAAGCGACCGCAG
CTTTTTACGGAACACTCGCGATACGAACCAGGAGATGTTTTGCGTGCAAA
TTGCAGTACTTTGCCATCTCGGCCTCGAGCTGATCTTCGTTTCACCATCA
ACAATATTCCCGTCAGCACGGAGGAAACGCAGTACATTCGAACGGTTGAC
AGCCTGATTGCATCCCGGCTCAGTCTGAAGCTGCAGCTGCAGGCGACTCA
CTTTGTGGCTGGGCTCAGTGCCCATGGAAATGGAACGGGAATGGTAATGG
CAATGAAATGGCAACGGCAATGGCCTGCGACGCACTGCAACTGGGTGGCG
CGGCGGAGCGCTGGAGCGAGGACTCATCCTGCGTTGTACGCGCAAATTGC
GATCTCTATCAGGAGTACAAGAAATAAAAGCTGGGCACAACCGCAAAAGA
TTCCGTTGCCGCCCAGAAGTAAGCCCTCAAAAGATAACTGCGAACAGGCC
CGAAGCACTGAAAAGAAAAATAATATTTCCGGCAAGCTTCCGACCTGCGT
TGGCC
FMO11022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIb-RC | 2442 | CG4135-RC | 721..1788 | 9..1067 | 4935 | 98.2 | Plus |
| beat-IIb-RA | 2070 | CG4135-RA | 340..1416 | 9..1067 | 4820 | 97.3 | Plus |
| beat-IIa-RB | 2829 | CG14334-RB | 983..1365 | 324..706 | 420 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17247271..17247538 | 276..9 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 17239692..17239908 | 492..276 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 17233181..17233547 | 1119..762 | 1045 | 91.3 | Minus |
| 3R | 32079331 | 3R | 17238911..17239047 | 763..627 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 17239478..17239613 | 627..492 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17332505..17332662 | 481..324 | 220 | 75.9 | Minus |
Blast to na_te.dros performed 2014-11-27 20:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6938 | 21..258 | 201 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2567 | 37..268 | 185 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2421 | 95..239 | 171 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1151 | 118..230 | 163 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6832 | 126..250 | 142 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2880 | 33..267 | 141 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1148 | 192..239 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2367 | 184..239 | 136 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1136 | 199..239 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6767 | 185..239 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6829 | 139..238 | 131 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6842 | 185..239 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2826 | 19..239 | 128 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6788 | 192..239 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6809 | 192..239 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6776 | 184..239 | 120 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6797 | 185..239 | 115 | 70.9 | Plus |
FMO11022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:06 Download gff for
FMO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RB | 331..1361 | 1..1021 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:23 Download gff for
FMO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 713..1790 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:24 Download gff for
FMO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 713..1790 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:24 Download gff for
FMO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17247271..17247546 | 1..276 | 98 | | Minus |
| 3R | 17239693..17239907 | 277..491 | 100 | <- | Minus |
| 3R | 17238913..17239046 | 628..761 | 100 | <- | Minus |
| 3R | 17239478..17239613 | 492..627 | 100 | <- | Minus |
| 3R | 17233278..17233547 | 762..1021 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:23 Download gff for
FMO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13059000..13059269 | 762..1021 | 95 | <- | Minus |
| arm_3R | 13064635..13064768 | 628..761 | 100 | <- | Minus |
| arm_3R | 13065200..13065335 | 492..627 | 100 | <- | Minus |
| arm_3R | 13065415..13065629 | 277..491 | 100 | <- | Minus |
| arm_3R | 13072993..13073268 | 1..276 | 98 | | Minus |
