FMO11023.5prime Sequence
1130 bp (988 high quality bases) assembled on 2011-11-18
> FMO11023.5prime
CAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAGATATAGAT
GATTTTATTACGCCCTCACAGCCCGTGCAAATAGATAAGGCAAGGTCAAA
GACTGGGGCAAAGATAAAGATAAAAGGTGACGGCTGCTTTGAGGAATCAG
AGAGTGGAAATCTAAAACTTAATAAAGTTGATATTTCTCTGCAAGACTGT
CTTGCGTGTTCTGGTTGCATCACTTCAGCTGAAGAAGTCCTTATCACGCA
GCAGAGCCGAGAAGAGTTGCTTAAGGTCCTTCAAGAGAATTCAAAGAATA
AGGCCTCTGAAGACTGGGATAACGTGCGTACGATCGTGTTCACCCTTGCC
ACCCAGCCTATACTAAGCTTAGCCTATCGCTATCAGATAGGTGTGGAGGA
TGCTGCCCGTCATCTTAATGGGTATTTTCGCAGTTTGGGTGCCGACTATG
TTTTGTCCACTAAGGTGGCGGACGATATTGCGCTGCTCGAATGTCGTCAA
GAATTTGTAGATAGGTACCGCGAAAATGAGAACTTGACCATGCTTAGCTC
CTCTTGTCCGGGGTGGGTTTGTTACGCGGAGAAAACACACGGAAACTTCT
TATTGCCTTACGTTTCCACGACCCGATCTCCTCAGCAAATAATGGGAGTG
CTTGTGAAGCAAATCCTTGCCGATAAGATGAATGTTCCTGCGTCACGAAT
CTACCATGTGACCGTGATGCCTTGCTACGACAAGAAGCTTGAGGCCTCTC
GAGAGGACTTTTTCAGCAAGGCAAATAACTCACGCGACGTAGACTGTGTA
ATCACTTCAGTTGAGGTGGAACAGTTGCTTAGTGAGGCTCAGCAGCCGCT
GTCGCAGTACGATCTCCTTGATTTAAACTGGCATGGTCTAATGTACGCCC
AGAATTCTTGGTATGGGCTCACGAGAAGACGCTATCTGGCGGTTACGCAG
AACACATATTTTAAGTACGCCGCAAACATATTTTCACGAGATTTAAAACA
GAGTTGGATTCAACAGCTTCAAAACCGCGACTTAGAGAATTATACTTAAA
CAGGATTGCAACCTGTCCTGAATTGCAATTGCTTACGGTTTCGGGAACAT
ACAACCTTGGTTACAAAACCTGTGAAACCG
FMO11023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RC | 1785 | CG17683-RC | 88..1213 | 8..1122 | 5110 | 97.7 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 88..1225 | 8..1122 | 4980 | 96.7 | Plus |
| CG17683-RE | 1823 | CG17683-RE | 213..1251 | 70..1122 | 4415 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131320..4131979 | 151..810 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132341 | 808..1104 | 805 | 91.6 | Plus |
| 2R | 25286936 | 2R | 4131186..4131268 | 70..152 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 4131061..4131124 | 8..71 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 230..135 | 122 | 59.8 | Minus |
FMO11023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:06 Download gff for
FMO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RE | 69..132 | 8..71 | 100 | -> | Plus |
| CG17683-RE | 196..1257 | 72..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:27 Download gff for
FMO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 88..1213 | 8..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:27 Download gff for
FMO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 88..1213 | 8..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:27 Download gff for
FMO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4132037..4132359 | 811..1122 | 92 | | Plus |
| 2R | 4131061..4131124 | 8..71 | 100 | -> | Plus |
| 2R | 4131188..4131268 | 72..152 | 100 | -> | Plus |
| 2R | 4131322..4131979 | 153..810 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:27 Download gff for
FMO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18566..18629 | 8..71 | 100 | -> | Plus |
| arm_2R | 18693..18773 | 72..152 | 100 | -> | Plus |
| arm_2R | 18827..19484 | 153..810 | 100 | -> | Plus |
| arm_2R | 19542..19864 | 811..1122 | 92 | | Plus |
