FMO11024.5prime Sequence
886 bp (886 high quality bases) assembled on 2011-11-18
> FMO11024.5prime
CAGTCGACATGATGCGAAATGCCTTGTTAGTAAGCGGCAAACTGAGACAT
TTGCTATCCTGTTCTATCGGGCGAAATTCGACTAGAAGCAGCAGCACAGC
GAAGTCGTTGGATGCCGGCACCCAAAAGGAAGTGCGGCACCATGAGAATC
ACGCCTCGGAGTGGTGGAATCAAAATGGAACCATGGGTGCTCTACATGCC
CTGAATGAGATTAGGGTTCCCTTTATCAGAGATGGCATCGTTTCGCGTGG
CACTGTGAAGCCAGGTTACGTAAATACCACCAAAGTGTTGTTGGGTCAAA
ATATTCTGGAGGTCGGATGTGGCGGAGGATTGCTTACGGAACACTTGGCG
CGCCTGGGTGCCCAGGTGGCTGGCATAGATCTTGGCGAGAAGTTAATAGA
AGCTGCTCGCGAGCATCTCAAATGCTCCAGTCCGGAGTTGGCCAGCAATG
TGGTGTACAAAATTGAGCCGGTGGATCAGCATGCCAAGGCCAATTGCGAA
TGCTATGATGCGGTGATAGTGTCTGAAGTTCTGGAGCACGTCAAAGATAA
AGTGTCCCTGCTGGAGGCCAGTGTACGCAGCCTAAAGCCTGGAGGATCCA
TCTTTATCACCACTTTGAACAAAACCATACCCAGTTGGTTCGGTGGCGTG
TTACTCAGCGAGTATGTTCTCAATCTGGTGCCCAGGGGAACGCACCACTG
GGACAAAATGATTTCGCCCTTGGACGTTCAGCGCATCTTGATACGATGAA
CTGTCAGACGGTGTTGGTAATGGAAGCACCTACGACTTTTGGAGCAACAC
CTGCGATGGATCAACAACAACCAGATGTGCTACGCCTTGCAGCGGTGAAC
AAGCACAGCGCGAGTACATGCAAGCTTTCTAGACAT
FMO11024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9249-RB | 991 | CG9249-RB | 49..913 | 9..868 | 4200 | 99.4 | Plus |
| CG9249-RA | 1065 | CG9249-RA | 49..787 | 9..746 | 3670 | 99.9 | Plus |
| CG9249-RA | 1065 | CG9249-RA | 851..976 | 747..868 | 530 | 96.8 | Plus |
| Mpp6-RA | 1335 | CG9250-RA | 1172..1297 | 868..747 | 530 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21157718..21158245 | 740..213 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 21158303..21158481 | 215..37 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 21157522..21157647 | 868..747 | 430 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:57 has no hits.
FMO11024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:07 Download gff for
FMO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 26..896 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:32 Download gff for
FMO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 49..919 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:32 Download gff for
FMO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 49..919 | 9..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:32 Download gff for
FMO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21157516..21157647 | 747..873 | 94 | <- | Minus |
| 2L | 21157711..21158243 | 215..746 | 99 | <- | Minus |
| 2L | 21158304..21158480 | 38..214 | 100 | <- | Minus |
| 2L | 21158535..21158563 | 9..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:32 Download gff for
FMO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21157516..21157647 | 747..873 | 94 | <- | Minus |
| arm_2L | 21157711..21158243 | 215..746 | 99 | <- | Minus |
| arm_2L | 21158304..21158480 | 38..214 | 100 | <- | Minus |
| arm_2L | 21158535..21158563 | 9..37 | 100 | | Minus |
