FMO11027.5prime Sequence
281 bp (281 high quality bases) assembled on 2011-11-18
> FMO11027.5prime
CAGTCGACATGGCTTTTAGGAACTGGTTTTCGCTTCCCGCCGTCAGAGCT
GATGACGAAGAGGACTTAGTTGACCCTCAAGCAGTTTTAAGGGAAAAATG
TCAAGCTAAAGGTCACATAGAATCCTTGTACAATAAGTACCAAGAGTGCA
ATGATCGTGTTAATGGGCGATCCAAAACAACTGAGACTTGCATCGAAGAA
TTATTTGACTATGTTGCTGAGTTAGATCATTGCGTTTCGCACAGTCTTTT
TACAAAGCTTAAGGCAAGCTTTCTAGACCAT
FMO11027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucrh-RD | 506 | CG41623-RD | 95..349 | 9..263 | 1275 | 100 | Plus |
| Ucrh-RC | 434 | CG41623-RC | 97..351 | 9..263 | 1275 | 100 | Plus |
| Ucrh-RB | 416 | CG41623-RB | 79..333 | 9..263 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25121043..25121214 | 92..263 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 25120902..25120991 | 9..98 | 435 | 98.9 | Plus |
| 2R | 25286936 | 2R | 8677379..8677576 | 50..247 | 435 | 81.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:51 has no hits.
FMO11027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:16 Download gff for
FMO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucrh-RD | 102..359 | 9..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:38 Download gff for
FMO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucrh-RB | 79..336 | 9..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:24 Download gff for
FMO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucrh-RB | 79..336 | 9..267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:24 Download gff for
FMO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25120902..25120985 | 9..92 | 100 | -> | Plus |
| 3L | 25121044..25121217 | 93..267 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:38 Download gff for
FMO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 606358..606441 | 9..92 | 100 | -> | Plus |
| 3LHet | 606500..606673 | 93..267 | 98 | | Plus |
