Clone FMO11030 Report

Search the DGRC for FMO11030

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:30
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6330-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11030.5prime Sequence

1069 bp (1033 high quality bases) assembled on 2011-11-18

> FMO11030.5prime
CAGTCGACATGTCGCTGCTGCTCACCGGAAACAGTGCCTCCCTTTCCGAG
GAGGAGCTCGACGAGTACTCCGATGGAACCGTCAAATTGCGCAACTCGAA
CATTGAGCTCATGGACCAGGATATCCTCTATCACCTGGCCTTGGGCAGCG
AGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAAGTTCGTTTGCATG
GGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATTTCATAATGAACGA
GATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAGGACATCAGCGCCT
ATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGTGCTGTGCGTCAGC
CATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGCATGAGATGATCAA
GCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTCATCAGGATAGGAA
CGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCATCATCACCGAAGAT
GCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTACCATTCTCGGCAA
GACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTGGCCCGTGAGCTAA
AGTCCCTGGCCAGTCCCGATGATCCGTACGATACCATTATTGGCAAGACG
CTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTTTGGACGGCGCATT
CTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTGGAGAAGCTGCGCG
AGAACGGCGTGGTCAACATCGAGATGGAGAGCACCATCTTTGCGGCCCTG
ACCCACCATGCCGGCATCAAGGCAGCGGTGGTGTGTGTCGCCCTGCTGAA
CCGCCTCAATGGGGATCAGGTCAACGCGCCCAAGGAGGTCATGAACGAGT
GGCAAGCGCGTCCGCAGATCCTCGTGTCGCGCTATATTCGCAAGGTCCTT
ACGCACAATGGACAGCTGAGCGCTTATTCGGACACAGGGGATCCATCAAG
TCACCCCCGGCCGCTTCAAGCTCGTCCAGCAGGAGTCCTCAGCCCACGAG
GCAAGCTTTCTAAGACCAT

FMO11030.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6330-RB 2075 CG6330-RB 299..1339 9..1050 5030 99.1 Plus
CG6330-RA 1541 CG6330-RA 252..1236 65..1050 4750 99.1 Plus
CG3788-RB 1758 CG3788-RB 928..1104 314..490 345 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26950638..26951009 908..537 1860 100 Minus
3R 32079331 3R 26951072..26951428 536..180 1755 99.4 Minus
3R 32079331 3R 26951775..26951898 188..65 620 100 Minus
3R 32079331 3R 26950428..26950569 1050..908 455 91 Minus
2R 25286936 2R 22932746..22932922 490..314 345 79.7 Minus
3R 32079331 3R 26956517..26956575 67..9 295 100 Minus
Blast to na_te.dros performed 2014-11-27 20:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 200..283 192..110 111 60.7 Minus
Tabor 7345 Tabor TABOR 7345bp 7039..7122 192..110 111 60.7 Minus

FMO11030.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:18 Download gff for FMO11030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6330-RB 288..1338 1..1054 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:49 Download gff for FMO11030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6330-RB 292..1342 1..1054 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:35 Download gff for FMO11030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6330-RB 292..1342 1..1054 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:35 Download gff for FMO11030.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26951775..26951898 65..188 100 <- Minus
3R 26956520..26956581 1..64 93   Minus
3R 26950638..26951009 537..908 100 <- Minus
3R 26951072..26951419 189..536 100 <- Minus
3R 26950424..26950568 909..1054 92 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:49 Download gff for FMO11030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22776146..22776290 909..1054 92 <- Minus
arm_3R 22776360..22776731 537..908 100 <- Minus
arm_3R 22776794..22777141 189..536 100 <- Minus
arm_3R 22777497..22777620 65..188 100 <- Minus
arm_3R 22782242..22782303 1..64 93   Minus