FMO11031.5prime Sequence
1158 bp (1050 high quality bases) assembled on 2011-11-18
> FMO11031.5prime
CAGTCGACATGTCGACGCCAGAGAACAAAATCCCGACGGTCACTGCGGGC
TACGGAGAAAACGAGAAGCCCAAAGGCGGCAAAGGCGGGCAATCCAAGTT
CATACGTTCGGACATGGCCGACGTACCCGTGCAGCAGGCGGCAGGATCGA
CGCTTCCGTTGGTAATCTCTCGGAAAAAAGGCGACGACTCCGAGGATGGC
AACTACAATCCGTTCGAGCACCGCAAGGTGGAGCATCCGACATCGGATCT
CGAGACATTTGTACACTTGCTAAAGGGATCGCTTGGCTCCGGAATATTGG
CCATGCCAATGGCCTTCTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCC
ACCTTCGCGGTGGGCACCTTGTGCACCTACTGCGTCCACATTCTGGTCAA
GTGCGCCCACATCCTGTGCCGACGTCGTAAAATCCCGATGATGGGATTCG
CCGATGTGGCGGAACAGGCTTTCCTCGACGGACCACCTGCCCTGAATCGC
TGGTCACGCTTCATCCGGTTCATGGTCAATACGTTTCTGGTTATCGATTT
GCTGGGCTGCTGCTGCATCTATCTGGTTTTCGTGGCCACCAATGTGGAGC
AGGTCGTGCGGGTGTATATGGAAACGGAGCTGAGCATTAGAGTTTGGATC
ATGATCGTGACGGCACCGCTAATCTTTATGTGCCTGGTACGCAACCTGAA
GTTCCTCACGCCCTTCTCGATGATAGCCAACATCCTGATGTTCGTGGGCA
TCGTGATCACCTTCATCTATATGTTCTCCGATATTCCTGCACCCGTGGAA
CGTCCTGAAATTGTGAGTGTAACCGAATGGCCATTGTTCTTCGGCACCGT
GATCTTTGCTCTGGAGGGCATCGGTGTAGTTATGTCCCTGGAGAACGACA
TGAAGAACCCCAGCCACTTCATCGGTTGCCCATCTGTCCTGAACTTCGGC
ATGGTCTGGTGATTGCCCTCTAAACTCTGGTTGGATTCTTTGGCTTTCTG
AAGTACGCCGGAAACCCAGGCCAGCATTACGCTGAATCTGCCCTGGAAGA
ATAAGTTGGCCATCCGGTCAAGTTGATGATGCATTCGCCATCTTCTTCAC
CCTCCACCTGCAGTTCTACGTGCCGTCACGGAATTTGGAGGCCTGACACA
TAAGATTC
FMO11031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RD | 2188 | CG43693-RD | 92..1220 | 8..1130 | 5290 | 98.3 | Plus |
| CG43693-RG | 2434 | CG43693-RG | 357..1466 | 27..1130 | 5195 | 98.3 | Plus |
| CG43693-RB | 2399 | CG43693-RB | 322..1431 | 27..1130 | 5195 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037620..11038434 | 1056..245 | 3855 | 98.8 | Minus |
| 3L | 28110227 | 3L | 11039617..11039764 | 245..98 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 11039996..11040068 | 99..27 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:57:25 has no hits.
FMO11031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:19 Download gff for
FMO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RD | 83..1227 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:54 Download gff for
FMO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 85..1229 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:38 Download gff for
FMO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 85..1229 | 1..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:38 Download gff for
FMO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11039998..11040068 | 27..97 | 100 | <- | Minus |
| 3L | 11037622..11038434 | 245..1054 | 98 | <- | Minus |
| 3L | 11039618..11039764 | 98..244 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:54 Download gff for
FMO11031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030722..11031534 | 245..1054 | 98 | <- | Minus |
| arm_3L | 11032718..11032864 | 98..244 | 100 | <- | Minus |
| arm_3L | 11033098..11033168 | 27..97 | 100 | <- | Minus |
