FMO11032.5prime Sequence
542 bp (542 high quality bases) assembled on 2011-11-18
> FMO11032.5prime
CAGTCGACATGCGTCACGCTGTGATCCTTGTTTTCGTGTGTTGCCTGCTG
ATCGCCTTAACCTCAGCCGGTTTGCTGGGCGGTGGAGGCGGTGGTGGTGG
CTACGGCGGTGGTGGTGGTGGTGGCTACGGCGGTGGTGGTGGTGGTCAGA
GCGGCTACGGCGGCGGTGGCCAAAAGAACGGAGGAGGCGGCCATGGAGGT
GGCGGCCAGGGAAGCTACGGAGGCGGTAGCCAAGGTGGACATGGAGGCGG
TGGCCAAGGAGGTTGGCAGAAGAACGGAGGAGGTGGTGGACAAGGAGGCT
ATGGAGGTGGCAATCAAGGTGGCCACGGAGGACAAGGAGGTTATGGCGGC
GGCGGTCATGGAGGCGGTGGCCATGCAAGCAAGTCCTTGGCCGGCAATCG
CGGTAGTTCCGTGTCCTGGCAGGGCGGAAATGGAGGCAACAAGAACGGTG
TCGGCGGAGGAGGTGGTGGTGGCCTGTACGGTGGTGGTGGCGGTGGAGGT
GGCAAACAACATGGCGGTGGCTGGGCAAGCTTTCTAGACCAT
FMO11032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5172-RD | 788 | CG5172-RD | 106..621 | 9..524 | 2550 | 99.6 | Plus |
| CG5172-RC | 531 | CG5172-RC | 106..382 | 9..285 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17221547..17221773 | 9..235 | 1135 | 100 | Plus |
| X | 23542271 | X | 17222277..17222484 | 317..524 | 1010 | 99 | Plus |
| X | 23542271 | X | 17222124..17222211 | 233..320 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:57:33 has no hits.
FMO11032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:20 Download gff for
FMO11032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 103..624 | 2..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:59 Download gff for
FMO11032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 103..624 | 2..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:41 Download gff for
FMO11032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 103..624 | 2..528 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:41 Download gff for
FMO11032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17221544..17221772 | 2..234 | 98 | -> | Plus |
| X | 17222126..17222209 | 235..318 | 100 | -> | Plus |
| X | 17222279..17222487 | 319..528 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:59 Download gff for
FMO11032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17116312..17116520 | 319..528 | 98 | | Plus |
| arm_X | 17115577..17115805 | 2..234 | 98 | -> | Plus |
| arm_X | 17116159..17116242 | 235..318 | 100 | -> | Plus |
