FMO11033.5prime Sequence
482 bp (482 high quality bases) assembled on 2011-11-18
> FMO11033.5prime
CAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTCGACTGGCG
GCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATCCAATCACA
GGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGACCAGCCAGT
TGAGCCAAGAGTGCCGTGGTCGCTGGCAAACGCAATTGGTGCGCAGATAC
TCGGCGAAACCGCCGCTCTCGCTGAAGCTGATCAATGAGCGCGTCTTGCT
TGTGCTCAAGCTCTACGACAAGATCGATCCCAGCAAGCTCAACGTTGAGT
CGCACTTCATCAACGACTTGGGACTGGATTCCTTGGACCACGTGGAGGTC
ATCATGGCCATGGAGGACGAGTTCGGTTTCGAGATCCCCGACTCTGATGC
CGAGAAGCTGCTTAAACCTGCCGACATTATTAAGTACGTCGCCGACAAGG
AGGATGTGTACGAGGCAAGCTTTCTAGACCAT
FMO11033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtacp1-RA | 740 | CG9160-RA | 106..565 | 5..464 | 2285 | 99.8 | Plus |
| mtacp1-RC | 739 | CG9160-RC | 345..652 | 157..464 | 1540 | 100 | Plus |
| mtacp1-RB | 625 | CG9160-RB | 359..538 | 285..464 | 900 | 100 | Plus |
| mtacp1-RC | 739 | CG9160-RC | 106..263 | 5..162 | 760 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1331278..1331456 | 286..464 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 1330137..1330291 | 5..159 | 760 | 99.4 | Plus |
| 3L | 28110227 | 3L | 1331038..1331177 | 155..294 | 655 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-27 20:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 363..454 | 117 | 61.3 | Plus |
FMO11033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:20 Download gff for
FMO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RA | 245..714 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:03 Download gff for
FMO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RA | 102..571 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:45 Download gff for
FMO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RA | 102..571 | 1..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:45 Download gff for
FMO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1330133..1330290 | 1..158 | 97 | -> | Plus |
| 3L | 1331042..1331170 | 159..287 | 100 | -> | Plus |
| 3L | 1331280..1331462 | 288..472 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:03 Download gff for
FMO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1330133..1330290 | 1..158 | 97 | -> | Plus |
| arm_3L | 1331042..1331170 | 159..287 | 100 | -> | Plus |
| arm_3L | 1331280..1331462 | 288..472 | 97 | | Plus |
