Clone FMO11036 Report

Search the DGRC for FMO11036

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6327-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11036.5prime Sequence

1173 bp (1069 high quality bases) assembled on 2011-11-18

> FMO11036.5prime
CAGTCGACATGTACAAGAACATCGACAATGAGTCCTCCACGACCATGTTT
GAAATGTACTCCTCCTCGGATAGGTTCATACGTTCGGACATGGCCGACGT
ACCCGTGCAGCAGGCGGCAGGATCGACGCTTCCGTTGGTAATCTCTCGGA
AAAAAGGCGACGACTCCGAGGATGGCAACTACAATCCGTTCGAGCACCGC
AAGGTGGAGCATCCGACATCGGATCTCGAGACATTTGTACACTTGCTAAA
GGGATCGCTTGGCTCCGGAATATTGGCCATGCCAATGGCCTTCTCCCACG
CTGGATTGTGGTTCGGTTTGGTGGCCACCTTCGCGGTGGGCACCTTGTGC
ACCTACTGCGTCCACATTCTGGTCAAGTGCGCCCACATCCTGTGCCGACG
TCGTAAAATCCCGATGATGGGATTCGCCGATGTGGCGGAACAGGCTTTCC
TCGACGGACCACCTGCCCTGAATCGCTGGTCACGCTTCATCCGGTTCATG
GTCAATACGTTTCTGGTTATCGATTTGCTGGGCTGCTGCTGCATCTATCT
GGTTTTCGTGGCCACCAATGTGGAGCAGGTCGTGCGGGTGTATATGGAAA
CGGAGCTGAGCATTAGAGTTTGGATCATGATCGTGACGGCACCGCTAATC
TTTATGTGCCTGGTACGCACCTGAAGTTCCTCACGCCCTTCTCGATGATA
GCCAACATCCTGATGTTCGTGGGCATCGTGATCACCTTCATCTATATGTT
CTCCGATATTCCTGCACCCGTGGAACGTCCTGAATTGTGAGTGTAACCGA
ATGGCCATTGTTCTTCGGCACCGTGATCTTTGCTCTGGAGGGCATCGGTG
TAGTTATGTCCCTGGAGAACGACATGAAGAACCCCAGCCACTTCATCGGT
TGCCCATCTGTCCTGAACTTCGGCATGGGTCTGGTGATTGCCCTCTACAC
TCTGGTTGGATTCTTTGGCTTCCTGAAGTACGGCCCGGGAAACCCAAGGC
AGCATTACGCTGATCTGCCCCTGGAGGATAAGTTGGCCCAATCGTCAAGT
GATGATTGCATCGCATTCTTCTCACTTTCACCTGCAGTTCTACGTGCCGT
CCGAATTTTGTGGAGTCTTGTAACCAAGATCCGCCGGAAAGCGAAACTCC
AGATCGAACTCGTTCTTACTAGG

FMO11036.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG43693-RC 2163 CG43693-RC 92..1205 9..1114 5205 98.5 Plus
CG43693-RG 2434 CG43693-RG 428..1476 74..1114 4880 98.4 Plus
CG43693-RB 2399 CG43693-RB 393..1441 74..1114 4880 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11037620..11038434 1033..221 3850 99.3 Minus
3L 28110227 3L 11039617..11039829 221..9 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:56:31 has no hits.

FMO11036.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:14 Download gff for FMO11036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6327-RC 84..1205 1..1114 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:24 Download gff for FMO11036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43693-RC 84..1205 1..1114 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:13 Download gff for FMO11036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43693-RC 84..1205 1..1114 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:13 Download gff for FMO11036.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11039618..11039833 1..220 98   Minus
3L 11037622..11038434 221..1031 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:24 Download gff for FMO11036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11032718..11032933 1..220 98   Minus
arm_3L 11030722..11031534 221..1031 99 <- Minus