FMO11037.5prime Sequence
1133 bp (1032 high quality bases) assembled on 2011-11-18
> FMO11037.5prime
CAGTCGACATGAAAGCTGGCCGCGCCTTCGGCTGCCTTTTCTGGGCTCTG
CTCTATTGTGTGCTCTATCTGGATCTGGTCAGTGGGAACTCCGCCGACGA
TGAGCTGATGGACTTTGATTTTGCGGATTCAAATGATGCTGCTATGGAGG
ACTGGCAGCTGGATGATCTGGAGGAGGCAAAAAAGGCGGAGCAGGCCGAA
AAGAAGTTGGAGTCGAATATGCTGGACTTTAGCGTAGATCTGGATGAACC
GGAGCCGGAGAAACAATTACCACCTTTCGATTGGCGAGAAAGGGTTTTAA
GAAACGCTCTGGCCAAAGCCTTGGCGGATGAGGGATTGCGCCAGAAGTTC
GCCGAAGTTTTGCCCATTTTAAGAATGCTATCTTCTCAACAGCGCCTGGC
TCTTTCCGCTTTGATCTCGGCTCAGATGAATGCAAAAAAGGGGCACGAAC
TAAAGTTTGAACAGGTTCGCATGATGTTTGGCAATGAAAAAAAGCTGCTT
TTGCCCATAGTGTTCGACATCGCAAATCTCATAAAGAGCTCTACCCGCAA
GTACATCAATCTGGGTTCTGATCTGGCTTCATCTGCCCTTTACCATACTC
CCATCAATCGTCGTGAAGATGATTTGACTCCAGAAGAGTCCCAACAGGAT
GACCAATTGGGCACCATTGCTGTGGAAGTTGAGCCAAAAAAGGTCTCTAC
TGAGGAGGTGCAATTGGAGTCTCTAGAGGACTTCTTTGATGAGATGGGGT
CAGAAGTGCTTGATCCTCAGATGATCAATGAGGCCCTGACAGGTGATCTT
CATGATAACAAAACCAAGACTTTTAAACCAGAAAATCATGGTCAAGAGTT
CGACGATCGGCAAACGAGTTTGTTCACAAATTGACCGATCCGTGCCTGCT
TCTGTGACCGAGCAGCACTTTTGGGTGGCATTGCTGGACGTACCATCAAG
CTTGAATACCACAGCTTTTCAACAGCCAGTAGCCAGGAGAGGGAAGATGG
GCTCCTCCAATGGTGGCCAGTCATACTCTGAGGGTGGAGATTCTGCTTTT
GCTGGTCTTATGCACGAAATCCCCCTGGAGCGCTGATGGACGATAGATCT
GCAGGAAACAGGCGCAGACTGAGAACCCTACCA
FMO11037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NT1-RH | 3581 | CG42576-RH | 129..1240 | 9..1111 | 5110 | 98.1 | Plus |
| NT1-RG | 3985 | CG42576-RG | 533..1644 | 9..1111 | 5110 | 98.1 | Plus |
| NT1-RE | 1900 | CG42576-RE | 421..1532 | 9..1111 | 5110 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4504708..4505311 | 1060..462 | 2560 | 97.2 | Minus |
| 3L | 28110227 | 3L | 4505398..4505855 | 466..9 | 2290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:16 has no hits.
FMO11037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:23 Download gff for
FMO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RB | 521..1646 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:19 Download gff for
FMO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RE | 413..1538 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:56 Download gff for
FMO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RE | 413..1538 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:56 Download gff for
FMO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4504647..4505308 | 465..1118 | 96 | <- | Minus |
| 3L | 4505400..4505862 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:19 Download gff for
FMO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4504647..4505308 | 465..1118 | 96 | <- | Minus |
| arm_3L | 4505400..4505862 | 1..464 | 99 | | Minus |
