FMO11038.5prime Sequence
1100 bp (1022 high quality bases) assembled on 2011-11-18
> FMO11038.5prime
CAGTCGACATGTTCGCATTGGCCTTGACGGTGGCGGCCTTGGTGCTTGCC
GGCCAGCAGGAGGTGTGCCGCGCACAGGTCTCCATCCACACGGACGCCAA
CTCGAACTCCTACAGCCTGAAGACGCCCGGAGTGCAGCAGACCTTCACCC
GGTACTACGGAGGAGCGGCCAAGAACCAGCAGGTGGAGCAGCCGCAGCTG
CAGCAGCCGCAGGAGCAGGAGCAGTTGCAAACTCCCACGCAATTTGGTGG
ATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCAGCCAGGAT
TCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGCTCCAGCAG
CAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCA
ACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACTCCTGGCCG
CCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGGGCGTTAGC
GGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCACGCCGCCTT
CCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCAGCAGCACC
TGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCGGCCTAACA
TCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCTGCTCCCGC
CGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAAACGCAGCTGGC
CGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGCAGCCCGA
GCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGAGGAGGTC
CAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTTGCCCCTC
CAACAGTCTGGGAGGGGGAGCAGTGAGACTTCTACTCCACGCAACAGCAC
ATGGGCTTCATGCAGCAGCAGCAGCAGACGTGCTCGTGACAGCAGCAGTC
GTGGCCATCAGTCGCACAGCCAGTTGCCCCACACCGCAGAAGCTATGGGA
TGGCCGTCAAGTCTCGTGCTTGGATCCCACTACAGCAATGCGACGTTCTT
FMO11038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RB | 1475 | CG32548-RB | 173..1234 | 8..1057 | 4860 | 98.2 | Plus |
| CG32548-RC | 1382 | CG32548-RC | 300..1141 | 228..1057 | 3760 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18436052..18436802 | 977..227 | 3555 | 99.1 | Minus |
| X | 23542271 | X | 18440190..18440409 | 227..8 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:25 has no hits.
FMO11038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:23 Download gff for
FMO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:23 Download gff for
FMO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:00 Download gff for
FMO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:00 Download gff for
FMO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18440190..18440416 | 1..227 | 98 | | Minus |
| X | 18435951..18436801 | 228..1063 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:23 Download gff for
FMO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18329984..18330834 | 228..1063 | 97 | <- | Minus |
| arm_X | 18334223..18334449 | 1..227 | 98 | | Minus |
