FMO11039.5prime Sequence
917 bp (917 high quality bases) assembled on 2011-11-18
> FMO11039.5prime
CAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGTCAGAGAAT
CTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTCCAGTCGCA
ATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTGTCAGTTCA
TGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCAAATTTCGT
ACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTGCAGGCGGG
CTTCAAGAAGATGTCTGTGGATAAGATCATTCCAGTTGATAAACTGATTA
AGGGACGCTTTCAAGACAACTTTGAGTTCCTTCAATGGTTTAAAAAATTC
TTCGACGCCAATTACGACGGTCGCGAGTACGACCCCGTGGCTCAGCGGGG
CGGAGTCAAGCTGGGCAATGGCAACGGACACGGCAGCAACGGAGGCAGTG
GCGTGGGCAGCAGCAACAACGATCTCCATCTGATGCACCGGCGACCATTG
CAGGCTCCAGCTTCTGGCGGACGAATGCCAGCACGGGTCATCGCTTCAAC
TGCAGTATCCAAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCA
GAATAAACGCCTGTGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTG
AGCAATTCGGTCAACAATCAACAAATAGAAGAGATGTCAAATCAGGTGAT
GGATATGCGCATAAACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACT
TCTCTAAGTTGCGGGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCC
GAGGCGCATCCGATCATACAAAAGATTTTGGACATCTTATATGCGACTGA
GGATGGTTTTGCGCCGCCTGACGATGCACCACCAGAGGACGAGGAGTATG
CAAGCTTTCTAGACCAT
FMO11039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RF | 1891 | CG3265-RF | 194..1086 | 7..899 | 4465 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 629..975 | 553..899 | 1735 | 100 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 722..1068 | 553..899 | 1735 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..461 | 7..367 | 1535 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6753225..6753503 | 274..552 | 1395 | 100 | Plus |
| 3L | 28110227 | 3L | 25202057..25202409 | 7..367 | 1150 | 89.2 | Plus |
| 3L | 28110227 | 3L | 25202577..25202847 | 553..825 | 1090 | 94.1 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 128..275 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754701..6754847 | 552..698 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 7..131 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 691..778 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 779..852 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 850..899 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767870..7768147 | 389..112 | 250 | 72.7 | Minus |
| 2R | 25286936 | 2R | 6754204..6754271 | 300..367 | 205 | 86.8 | Plus |
| 2R | 25286936 | 2R | 18852347..18852410 | 356..293 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:34 has no hits.
FMO11039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:24 Download gff for
FMO11039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 224..1127 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:27 Download gff for
FMO11039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 189..1092 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:04 Download gff for
FMO11039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 189..1092 | 1..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:04 Download gff for
FMO11039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6754702..6754844 | 553..695 | 100 | -> | Plus |
| 2R | 6754899..6754981 | 696..778 | 100 | -> | Plus |
| 2R | 6755185..6755238 | 852..908 | 92 | | Plus |
| 2R | 6752843..6752988 | 130..275 | 100 | -> | Plus |
| 2R | 6753227..6753503 | 276..552 | 100 | -> | Plus |
| 2R | 6755045..6755117 | 779..851 | 100 | -> | Plus |
| 2R | 6752657..6752784 | 1..129 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:27 Download gff for
FMO11039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2640348..2640493 | 130..275 | 100 | -> | Plus |
| arm_2R | 2640162..2640289 | 1..129 | 97 | -> | Plus |
| arm_2R | 2640732..2641008 | 276..552 | 100 | -> | Plus |
| arm_2R | 2642207..2642349 | 553..695 | 100 | -> | Plus |
| arm_2R | 2642404..2642486 | 696..778 | 100 | -> | Plus |
| arm_2R | 2642550..2642622 | 779..851 | 100 | -> | Plus |
| arm_2R | 2642690..2642743 | 852..908 | 92 | | Plus |
