FMO11040.5prime Sequence
1119 bp (999 high quality bases) assembled on 2011-11-18
> FMO11040.5prime
CAGTCGACATGACCCAGATCCCCGAGAGCTGTTATAAGATGTGGGGTGGT
AGGTTCACCGAGGGGCCGCATGAGGCTCTCCATTCGCTGAATAACAGCCT
GCCCTACGATTCTCGCCTCTATGCGGATGATTTGGACGCCAGCAAGGCGT
ATGCAGAGGCACTCCATCGAGCTGGTCTCATCAACTCAGCCGAGGCGGAT
AAGTTGGTAAAGAATCTGGAGCTGTTGCGATTCGATTGGATCGAGGGAAC
TGTGAAGATTCTACCCGGTGACGAGGATGTGCACACGGTGAACGAGCGAT
TGCTGGTGGAGATTACCGGCGAACTGGGCCAGCGGCTTCACACGGGCAGA
AGCAGAAATGACCAGGTGGTCACGGACATGAAGCTATGGCTTCGCAAGGC
CATTCGTGAGACCTTGGGCCGGCTGAGTGGCATCATTGAAACTGCCACCA
GGCAGGCGGAACTCCACCTGGGCGTCCTCATGCCAGGATACACGCATCTG
CAGCGGGCCCAGACCGTTCAGTTCTCCCACTGGCTGCTCTCGCACGCGTT
TGCATTAAGGGAAGATGGCCAGCGGCTGTTGGAGCTAAGGGATCGGGCGA
ATGTCCTGCCCCTTGGAAGTGGCGCTCTGGCGGGAAATCCCCTTGGCATC
GATCGTTTGTGGCTGGCCGAGAGGCTGGGATTCTCGGGTGTCACAGCCAA
CAGCATGCACGCCGTGGGAGATCGAGATTTTGTAGTTGACTTCATCTACT
GCTGCTCTATGGTGAGCCTGCATCTGTCCCGATTGGCGGAGGATTTGATC
ATCTACAGTACCCAGGAGTTCGACTTCATCAAACTGGCCGATGGCTTTTC
CAGTGGCAGCAGCCTGATGCTTCAGAAAAGGAATCCGGACAGCTTGAGCT
GATTCGCGGCATGGCCGGTGTTGATCACCGCCAATTCTGACGGGCAATAA
TTGATGACATTAGGGCACTCCGTTCCACTTACAACAGGCACTTGCAGTAC
GACAAGCCATTCTTGCTTTCAGTCCTTCGACAGCTGTCCCAGTGCTCGAA
GTTACGGATTGGTGTTCTTACGACGATTCAGGTCAAACAAGATTCAATGG
AGGCGCACTTAACTCAGAC
FMO11040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9510-RD | 1640 | CG9510-RD | 39..1149 | 8..1119 | 4995 | 97.3 | Plus |
CG9510-RC | 1922 | CG9510-RC | 381..1491 | 8..1119 | 4995 | 97.3 | Plus |
CG9510-RB | 1580 | CG9510-RB | 39..1149 | 8..1119 | 4995 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8940994..8941725 | 739..8 | 3645 | 99.9 | Minus |
2L | 23513712 | 2L | 8940288..8940658 | 1105..733 | 1060 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:44 has no hits.
FMO11040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:25 Download gff for
FMO11040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9515-RA | 1247..2366 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:31 Download gff for
FMO11040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9510-RB | 30..1149 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:08 Download gff for
FMO11040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9510-RB | 30..1149 | 1..1119 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:08 Download gff for
FMO11040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8940273..8940655 | 736..1119 | 92 | <- | Minus |
2L | 8940998..8941728 | 1..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:31 Download gff for
FMO11040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8940273..8940655 | 736..1119 | 92 | <- | Minus |
arm_2L | 8940998..8941728 | 1..735 | 99 | | Minus |