Clone FMO11040 Report

Search the DGRC for FMO11040

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:110
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9510-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11040.5prime Sequence

1119 bp (999 high quality bases) assembled on 2011-11-18

> FMO11040.5prime
CAGTCGACATGACCCAGATCCCCGAGAGCTGTTATAAGATGTGGGGTGGT
AGGTTCACCGAGGGGCCGCATGAGGCTCTCCATTCGCTGAATAACAGCCT
GCCCTACGATTCTCGCCTCTATGCGGATGATTTGGACGCCAGCAAGGCGT
ATGCAGAGGCACTCCATCGAGCTGGTCTCATCAACTCAGCCGAGGCGGAT
AAGTTGGTAAAGAATCTGGAGCTGTTGCGATTCGATTGGATCGAGGGAAC
TGTGAAGATTCTACCCGGTGACGAGGATGTGCACACGGTGAACGAGCGAT
TGCTGGTGGAGATTACCGGCGAACTGGGCCAGCGGCTTCACACGGGCAGA
AGCAGAAATGACCAGGTGGTCACGGACATGAAGCTATGGCTTCGCAAGGC
CATTCGTGAGACCTTGGGCCGGCTGAGTGGCATCATTGAAACTGCCACCA
GGCAGGCGGAACTCCACCTGGGCGTCCTCATGCCAGGATACACGCATCTG
CAGCGGGCCCAGACCGTTCAGTTCTCCCACTGGCTGCTCTCGCACGCGTT
TGCATTAAGGGAAGATGGCCAGCGGCTGTTGGAGCTAAGGGATCGGGCGA
ATGTCCTGCCCCTTGGAAGTGGCGCTCTGGCGGGAAATCCCCTTGGCATC
GATCGTTTGTGGCTGGCCGAGAGGCTGGGATTCTCGGGTGTCACAGCCAA
CAGCATGCACGCCGTGGGAGATCGAGATTTTGTAGTTGACTTCATCTACT
GCTGCTCTATGGTGAGCCTGCATCTGTCCCGATTGGCGGAGGATTTGATC
ATCTACAGTACCCAGGAGTTCGACTTCATCAAACTGGCCGATGGCTTTTC
CAGTGGCAGCAGCCTGATGCTTCAGAAAAGGAATCCGGACAGCTTGAGCT
GATTCGCGGCATGGCCGGTGTTGATCACCGCCAATTCTGACGGGCAATAA
TTGATGACATTAGGGCACTCCGTTCCACTTACAACAGGCACTTGCAGTAC
GACAAGCCATTCTTGCTTTCAGTCCTTCGACAGCTGTCCCAGTGCTCGAA
GTTACGGATTGGTGTTCTTACGACGATTCAGGTCAAACAAGATTCAATGG
AGGCGCACTTAACTCAGAC

FMO11040.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9510-RD 1640 CG9510-RD 39..1149 8..1119 4995 97.3 Plus
CG9510-RC 1922 CG9510-RC 381..1491 8..1119 4995 97.3 Plus
CG9510-RB 1580 CG9510-RB 39..1149 8..1119 4995 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8940994..8941725 739..8 3645 99.9 Minus
2L 23513712 2L 8940288..8940658 1105..733 1060 91.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:58:44 has no hits.

FMO11040.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-23 10:00:25 Download gff for FMO11040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9515-RA 1247..2366 1..1119 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:31 Download gff for FMO11040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9510-RB 30..1149 1..1119 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:08 Download gff for FMO11040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9510-RB 30..1149 1..1119 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:08 Download gff for FMO11040.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8940273..8940655 736..1119 92 <- Minus
2L 8940998..8941728 1..735 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:31 Download gff for FMO11040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8940273..8940655 736..1119 92 <- Minus
arm_2L 8940998..8941728 1..735 99   Minus